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r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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snaptools snap-pre #63

Open ghost opened 5 years ago

ghost commented 5 years ago

why does not snaptools snap-pre support bed.gz?? while on vignette, the example file is bed.gz?

r3fang commented 5 years ago

It does, can you show me error?

-- Rongxin Fang, Ren Lab Ludwig Cancer Research Bioinformatics Ph.D. Student University of California, San Diego

On Aug 1, 2019, at 4:33 PM, rong923 notifications@github.com wrote:

why does not snaptools snap-pre support bed.gz?? while on vignette, the example file is bed.gz?

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r3fang commented 5 years ago

can you show me a few lines in atac_v1_adult_brain_fresh_5k_fragments.sorted.bed.gz file?

-- Rongxin Fang, Ren Lab Ludwig Cancer Research Bioinformatics Ph.D. Student University of California, San Diego

On Aug 1, 2019, at 4:35 PM, rong923 notifications@github.com wrote:

Program: snaptools (A module for working with snap files in Python) Version: 1.4.7 Contact: Rongxin Fang E-mail: r4fang@gmail.com mailto:r4fang@gmail.com — You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/r3fang/SnapATAC/issues/63?email_source=notifications&email_token=ABT6GGZUZY6PV34UBK5SO6LQCNXKPA5CNFSM4IIYID22YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOD3MFLWQ#issuecomment-517494234, or mute the thread https://github.com/notifications/unsubscribe-auth/ABT6GG3II3NI2HCN3CELY23QCNXKPANCNFSM4IIYID2Q.