search

r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
301 stars 125 forks source link

What is the difference between Total Fragments and UMI? #72

Open emrecaglayan opened 5 years ago

emrecaglayan commented 5 years ago

What is the difference between Total Fragments and UMI? Is UMI whatever is left after removing the duplicates per cell? Thanks for the tool by the way.

r3fang commented 5 years ago

It is the unique fragments after removing everything

-- Rongxin Fang, Ren Lab Ludwig Cancer Research Bioinformatics Ph.D. Student University of California, San Diego

On Aug 23, 2019, at 12:03 PM, emrecaglayan notifications@github.com wrote:

What is the difference between Total Fragments and UMI? Is UMI whatever is left after removing the duplicates per cell? Thanks for the tool by the way.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/r3fang/SnapATAC/issues/72?email_source=notifications&email_token=ABT6GGYU2MVIRQB3CL24JALQGAYABA5CNFSM4IPCPMW2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HHDPLSA, or mute the thread https://github.com/notifications/unsubscribe-auth/ABT6GG7LJVKRWV37XKG76WLQGAYABANCNFSM4IPCPMWQ.