r3fang
commented
5 years ago hi Ryan,
I am still updating the package, can you install it later today. I will keep you posted.
-- Rongxin Fang Ph.D. Student, Ren Lab Ludwig Institute for Cancer Research University of California, San Diego
On Sep 5, 2019, at 11:10 AM, RZiffra notifications@github.com wrote:
Hi Rongxin,
I was trying to install SnapATAC after your recent updates and ran into the following error:
install_github("r3fang/SnapATAC") Downloading GitHub repo r3fang/SnapATAC@master ✔ checking for file ‘/tmp/Rtmp0qcFr2/remotes1596722e864f/r3fang-SnapATAC-b046464/DESCRIPTION’ ... ─ preparing ‘SnapATAC’: ✔ checking DESCRIPTION meta-information ... ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ looking to see if a ‘data/datalist’ file should be added ─ building ‘SnapATAC_1.0.0.tar.gz’
Installing package into ‘/home/rziffra/R/x86_64-pc-linux-gnu-library/3.6’ (as ‘lib’ is unspecified)
installing source package ‘SnapATAC’ ... using staged installation R Error in .install_package_code_files(".", instdir) : files in 'Collate' field missing from '/tmp/RtmpZggkNa/R.INSTALL1d0ab5e4fcc/SnapATAC/R': runJDA.R ERROR: unable to collate and parse R files for package ‘SnapATAC’ removing ‘/home/rziffra/R/x86_64-pc-linux-gnu-library/3.6/SnapATAC’ restoring previous ‘/home/rziffra/R/x86_64-pc-linux-gnu-library/3.6/SnapATAC’ Error: Failed to install 'SnapATAC' from GitHub: (converted from warning) installation of package ‘/tmp/Rtmp0qcFr2/file1596756853cd/SnapATAC_1.0.0.tar.gz’ had non-zero exit status It looks like the runJDA.R script is no longer present in the R directory but still expected.
Thanks, Ryan
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ccruizm
Hi Rongxin,
I was trying to install SnapATAC after your recent updates and ran into the following error:
Installing package into ‘/home/rziffra/R/x86_64-pc-linux-gnu-library/3.6’ (as ‘lib’ is unspecified)
It looks like the runJDA.R script is no longer present in the R directory but still expected.
Thanks, Ryan