r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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Minor/Warning issue: 'rBind' is deprecated #98

Open hypercompetent opened 5 years ago

hypercompetent commented 5 years ago

Hi Rongxin,

Thanks for this fantastic package - I'm using it now along with your very nice documentation to analyze multiple 10x runs together.

I noticed this Warning message pop up when I ran:

> snap <- Reduce(snapRbind, snap.list)
Warning message:
'rBind' is deprecated.
 Since R version 3.2.0, base's rbind() should work fine with S4 objects

This is clearly not a show-stopper, but I thought I'd add it here in case you'd like to swap in rbind for rBind and have one less warning. Since SnapATAC requires R > 3.4.0, rbind should work.

Cheers, -Lucas

r3fang commented 4 years ago

Hi Lucas,

I am sorry for the late response and thank you for the suggestion, I have recently moved from San Diego to Boston and was quite busy for the last few weeks. I will update it this week

On Sep 16, 2019, at 3:05 PM, Lucas Graybuck notifications@github.com wrote:

Hi Rongxin,

Thanks for this fantastic package - I'm using it now along with your very nice documentation to analyze multiple 10x runs together.

I noticed this Warning message pop up when I ran:

snap <- Reduce(snapRbind, snap.list) Warning message: 'rBind' is deprecated. Since R version 3.2.0, base's rbind() should work fine with S4 objects This is clearly not a show-stopper, but I thought I'd add it here in case you'd like to swap in rbind for rBind and have one less warning. Since SnapATAC requires R > 3.4.0, rbind should work.

Cheers, -Lucas

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hypercompetent commented 4 years ago

No problem! This is very minor.

I hope the move has gone well! Cheers, -Lucas