function create_fisherydata

r4atlantis / atlantisom

Atlantis operating model. Generates data sets from Atlantis scenarios.

https://r4atlantis.github.io/atlantisom

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function create_fisherydata #7

Open kellijohnson-NOAA opened 8 years ago

kellijohnson-NOAA commented 8 years ago

The function create_fisherydata is being created and will be based on create_survey but without a catchability parameter.

[x] upload to github
[x] documet
[ ] test that it plays nice with the other functions

allanhicks commented 8 years ago

Added create_fishery_subset. The sampling functions will take care of the observation error. This function simply subsets the data by specific polygons that are assumed to be sampled.

allanhicks commented 8 years ago

I'm not sure of the format of the catch from run_atlantis. Is a matrix with species, age, polygon, layer, time, and numbersAtAge available for the fishery catch?