Download and query fulltext from PMC OASS

[DASpringate]

• Get PMC IDs from downloaded PubMed files and pull down xml if it is in OASS
• Convert XML to R objects / JSON
• Add predicate functions for fulltext to rpubmed_textsearch.R

[DASpringate]

So, we can potentially:

• Scape pubmed for PMCID's and then use these to scape PMC for XML, convert to R objects which can be queried with get_articles_by_terms() + some new helper predicate functions. I am guessing that Pubmed frowns on this approach!
• Download PMIDs from Entrez directly via a modified rentrez_search (Can you download full text XML from PMCOASS via entrez_fetch?), convert as above

Then we need to add functionality to fetch_in_chunks() to automate this...

[DASpringate]

Info here: http://www.ncbi.nlm.nih.gov/pmc/tools/oa-service/

[sckott]

nice, sounds good