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raacampbell / matlab_elastix

MATLAB Elastix wrapper
http://www.mathworks.com/matlabcentral/fileexchange/52982-matlab-elastix
GNU Lesser General Public License v3.0
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Getting an error when using an Elastix parameter file #26

Closed fabioeffe closed 3 years ago

fabioeffe commented 3 years ago

I am trying to use your wrapper with an Elastix parameter file (in .txt format) but I get this error:

Undefined function or variable 'paramFname'. Error in elastix (line 247) copyfile(paramFname,outputDir)

Error in Register_images_FF2 (line 30) elastix(movingImage,fixedImage,outputDir,param_file);

Do you know what could cause it?

Thanks!

raacampbell commented 3 years ago

Please can you post your command history that led to this. It's impossible to diagnose what the problem is with so little information. Does the example code run? If so, I suspect it's a syntax error in calling the function.

yuanci89 commented 3 years ago

I'm actually having the same issue now. I think it's somehow calling paramFname before that variable has been initialized.

elastix(Angiorun,MPRresize,'C:\Users\yuanc\Dropbox (University of Michigan)[ASNR ASFNR AI Workshop]\test\','C:\Users\yuanc\Dropbox (University of Michigan)[ASNR ASFNR AI Workshop]\matlab_elastix-master\example_parameter_files\parameters_Rigid.txt')

Unrecognized function or variable 'paramFname'.

Error in elastix (line 247) copyfile(paramFname,outputDir)