Attempting to generate the surface visualizations of parcellation ... Freesurfer does not seem to be installed - skipping surface visualizations.

raamana / visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

https://raamana.github.io/visualqc/

Apache License 2.0

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Attempting to generate the surface visualizations of parcellation ... Freesurfer does not seem to be installed - skipping surface visualizations. #53

Closed MarcKhoury8 closed 2 years ago

MarcKhoury8 commented 2 years ago

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Description

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What I Did

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raamana commented 2 years ago

Hi @MarcKhoury8, thanks for reporting the issue. As the error message suggests, you need Freesurfer, specifically tksurfer, installed, so visualqc can generate the necessary 3D surface visualizations. Do you have a question for any specific help?

raamana commented 2 years ago

closing this as a duplicate to #54

MarcKhoury8 commented 2 years ago

Hi @raamana, thank you for the reply. I've dug a bit into this tksurfer component and it seems as thought it has be deprecated and replaced with "freeview". I have freeview installed and it has also been sourced. My question is if there is a way to get around this issue and visualize the surface outputs? Specifically, if tksurfer is not deprecated or if freeview is now the replacement, are you aware what the process is to utilize either?