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rabix
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bunny
[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
http://rabix.io
Apache License 2.0
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Using templates for bash scripts in docker execution
#406
milos-ljubinkovic
closed
6 years ago
0
Tes/merge3
#405
milos-ljubinkovic
closed
6 years ago
0
Error handling and path fixes
#404
milos-ljubinkovic
closed
6 years ago
0
Input json does not support symlink file while input_parameters works fine with it
#403
yuankunzhu
opened
6 years ago
1
GC concurrency fix
#402
smiljevic
closed
6 years ago
0
Loading only first 65536 bytes of file (or less)
#401
4toblerone
closed
6 years ago
0
REST API: add a cancel endpoint
#400
buchanae
opened
6 years ago
0
s3 + tes: broken object path
#399
buchanae
closed
6 years ago
1
s3 storage: NIO S3 library does not support glob
#398
buchanae
opened
6 years ago
3
bwa mem doesnt start
#397
gezthxbio
closed
6 years ago
2
Bugfix/job repo leak
#396
smiljevic
closed
6 years ago
0
Space in file path fix
#395
milos-ljubinkovic
closed
6 years ago
0
Process files after discovering secondary ones
#394
milos-ljubinkovic
closed
6 years ago
0
Input port secondary files aren't processed
#393
milos-ljubinkovic
opened
6 years ago
2
Scaling and group id as produced by id
#392
4toblerone
closed
6 years ago
0
Task/job
#391
4toblerone
closed
6 years ago
0
Bunny engine scaling changes including event sourcing support using postgres
#390
smiljevic
closed
6 years ago
0
Workflow finishes fine, but seeing a lot of stack trace error messages
#389
dyermd
opened
6 years ago
2
One des
#388
4toblerone
closed
6 years ago
0
Can not run anything if preceding folders have spaces
#387
markosbg
opened
6 years ago
4
[ERROR] Could not find auth config for quay.io. Returning empty builder
#386
mepstein-gh
opened
6 years ago
11
what is the road map for user space docker?
#385
davidroberson
closed
6 years ago
2
Bugfix/relativepaths
#384
milos-ljubinkovic
closed
6 years ago
0
bunny 1.0.3 resolving relative file paths from step directory
#383
chapmanb
opened
6 years ago
2
bunny with TES backend does not handle scatter
#382
kmhernan
opened
6 years ago
29
Task is complete when there are still running jobs in the background
#381
milos-ljubinkovic
opened
6 years ago
0
org.rabix.bindings.cwl.processor.CWLPortProcessorException: Failed to set input file properties
#380
bogdang989
opened
6 years ago
10
File location bugs
#379
milos-ljubinkovic
opened
6 years ago
1
Bump to v1.0.3
#378
bogdang989
closed
6 years ago
0
Develop
#377
milos-ljubinkovic
closed
6 years ago
0
Tes fixes
#376
milos-ljubinkovic
closed
6 years ago
0
Less debug logs
#375
milos-ljubinkovic
closed
6 years ago
0
Docker start container smarter retry
#374
milos-ljubinkovic
closed
6 years ago
0
TES merge
#373
milos-ljubinkovic
closed
6 years ago
1
TES model updates
#372
milos-ljubinkovic
closed
6 years ago
0
Work around error 304 on docker interface
#371
milos-ljubinkovic
closed
6 years ago
0
Update TES backend to match v0.2 schema
#370
adamstruck
closed
6 years ago
18
Fix for javascript interpolation
#369
milos-ljubinkovic
closed
6 years ago
0
Output collection and intermediary files
#368
milos-ljubinkovic
opened
6 years ago
3
Linking input files
#367
milos-ljubinkovic
opened
6 years ago
4
Format on output port throws a casting exception
#366
milos-ljubinkovic
opened
6 years ago
0
Js fixes
#365
milos-ljubinkovic
closed
6 years ago
0
Improving re-run times with cache-dir
#364
chapmanb
opened
6 years ago
0
Intermediary files
#363
milos-ljubinkovic
closed
6 years ago
0
Allow empty array as valid input
#362
milos-ljubinkovic
closed
6 years ago
0
Develop
#361
milos-ljubinkovic
closed
6 years ago
0
Not setting keyValue in CommandLinePart causes NPE.
#360
AleksandarPetrovicSBG
closed
6 years ago
0
Simpler js interpolation and resolution,
#359
milos-ljubinkovic
closed
6 years ago
0
Allow paths without folder in step's run field
#358
AleksandarPetrovicSBG
closed
6 years ago
0
Fix/glob stderr
#357
sivkovic
closed
6 years ago
0
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