Integrate BBMap for Subsampling Step

rachelss / SISRS

Site Identification from Short Read Sequences.

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Integrate BBMap for Subsampling Step #25

Open BobLiterman opened 6 years ago

BobLiterman commented 6 years ago

Subsampling via BBMap suite can specify total final desired bases, eliminating need to take read length into account.

anderspitman commented 6 years ago

This is completed, right? At least I noticed the lastest master requires BBMap and seems to use an executable from that package.

BobLiterman commented 6 years ago

BBMap is currently used to rename scaffolds but this issue refers to the read subsampling step and as such, has not been addressed. The confusion is on my end for using a vague issue title.