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rachelss / SISRS

Site Identification from Short Read Sequences.
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Loci specific to Velvet #26

Closed BobLiterman closed 7 years ago

BobLiterman commented 7 years ago

copyRefContigs() code is specific to output format for velvet contig names. Should have either an assembler option, or auto-generate grep pattern from composite genome headers.

BobLiterman commented 7 years ago

Fixed by tagging composite genome with 'SISRS_' prefix for all sequences prior to mapping