search

rachelss / SISRS

Site Identification from Short Read Sequences.
24 stars 15 forks source link

Bio.Nexus.Nexus.NexusError: Dimensions must be specified before matrix! #72

Open Mnsztnxl opened 3 years ago

Mnsztnxl commented 3 years ago

when I run this command "sisrs sites -g 1745690 -p 40 -m 4 -f /usr/test_data -z /usr/output_data -t .99 -a minia" ,after few minutes, it's said:"raise NexusError('Dimensions must be specified before matrix!') Bio.Nexus.Nexus.NexusError: Dimensions must be specified before matrix! filtering for missing failed."

BobLiterman commented 3 years ago

Can you try this newer walkthrough?

https://github.com/BobLiterman/SISRS_Walkthrough

BobLiterman commented 3 years ago

If you made it all the way to filtering, you may be able to start later in the pipeline too. Feel free to hit me up on Twitter @BobLiterman

rachelss commented 2 years ago

@Mnsztnxl @BobLiterman Please go to the newest version https://github.com/SchwartzLabURI/SISRS/

rachelss commented 2 years ago

@Mnsztnxl Also check out https://schwartzlaburi.github.io/SISRS_CURE/book/ for a full walkthrough of a project with SISRS (designed at the undergrad level)