Make `verify-all` respect disabled and overriden commands

[jacksmith15]

Related issue: #20

This PR changes the verify-all command, so that overriden and disabled commands are respected by it.

It also adds a configuration option so that users can fine-tune what's included, the ordering, and add entirely new commands.

I think parts of this logic should be applied to other command groups (e.g. lint), but I'm not sure it should be part of this PR, as there are differences in how we might want to solve it. For example the lint group could just match every command called lint-*? Or it could have a separate config option, but that might get messy.

[codecov[bot]]

Codecov Report

Merging #22 (1506b3c) into main (9aa0f69) will decrease coverage by 0.12%. The diff coverage is 55.55%.

@@            Coverage Diff             @@
##             main      #22      +/-   ##
==========================================
- Coverage   48.77%   48.65%   -0.13%     
==========================================
  Files          20       20              
  Lines         695      707      +12     
  Branches       94       97       +3     
==========================================
+ Hits          339      344       +5     
- Misses        353      360       +7     
  Partials        3        3              

Flag	Coverage Δ
integration_tests	5.79% <11.11%> (+0.04%)	:arrow_up:
total	48.51% <55.55%> (-0.12%)	:arrow_down:
unit_tests	48.51% <55.55%> (-0.12%)	:arrow_down:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
src/delfino/click_utils/command.py	75.00% <40.00%> (-8.34%)	:arrow_down:
src/delfino/commands/verify_all.py	68.42% <54.54%> (-14.92%)	:arrow_down:
src/delfino/models/pyproject_toml.py	100.00% <100.00%> (ø)

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