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radical-collaboration / extasy-grlsd

Repository to hold the input data and scripts for the ExTASY gromacs-lsdmap work
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Pilot failed #115

Closed euhruska closed 5 years ago

euhruska commented 5 years ago

failed at launch

leonardo.rice.edu                                                                                                                                                                                                 using gpus                                                                                                                                                                                                        {'queue': 'high', 'resource': 'ncsa.bw_aprun', 'cpus': 800, 'project': 'bamm', 'access_schema': 'gsissh', 'gpus': 50, 'walltime': 2880}                                                                           shared_data_all ['settings_extasy_tica3_chignolin_long_cmicro.wcfg', './files-chignolin//system-5.xml', './files-chignolin//integrator-5.xml', './files-chignolin/chignolin-ca-crystal.pdb', './inp_files/run-ope nmm-xml3.py', './files-chignolin/chignolin.pdb', './helper_scripts/run-tica-msm5.py', './helper_scripts/analyze3.py']                                                                                             2019-02-27 18:28:18,848: radical.entk.resource_manager.0000: MainProcess                     : MainThread     : INFO    : Pilot pilot.0000 state: PMGR_LAUNCHING_PENDING                                          2019-02-27 18:28:18,852: radical.entk.resource_manager.0000: MainProcess                     : pmgr.0000.subscriber._state_sub_cb: INFO    : Pilot pilot.0000 state: PMGR_LAUNCHING                               2019-02-27 18:28:25,981: radical.utils       : pmgr.0000.launching.0           : MainThread     : DEBUG   : lm create  pool   for gsisftp://bw.ncsa.illinois.edu/shell_file_adaptor_command_shell/ ()  ()                                                                                                                                            2019-02-27 18:28:25,981: radical.utils       : pmgr.0000.launching.0           : MainThread     : DEBUG   : lm create  object for gsisftp://bw.ncsa.illinois.edu/shell_file_adaptor_command_shell/                2019-02-27 18:28:33,628: radical.entk.resource_manager.0000: MainProcess                     : pmgr.0000.subscriber._state_sub_cb: INFO    : Pilot pilot.0000 state: FAILED                                       2019-02-27 18:28:33,629: radical.entk.resource_manager.0000: MainProcess                     : pmgr.0000.subscriber._state_sub_cb: ERROR   : Pilot has failed
andre-merzky commented 5 years ago

Did that setup work before - if so, what changed? Can you please attach both client and pilot sandboxes?

Thanks!

euhruska commented 5 years ago

ugh, I added to the bashrc for another project. Removing this fixed the issue