radical-collaboration / extasy-grlsd

Repository to hold the input data and scripts for the ExTASY gromacs-lsdmap work
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unit has no prof file #60

Closed euhruska closed 6 years ago

euhruska commented 6 years ago

The pre_proc_task in https://github.com/radical-collaboration/extasy-grlsd/blob/master/extasy_tica.py#L43 has some failure, but I can't figure out why. It's a non-fatal failure but that unit doesn't even generate the .prof file and '$SHARED/%s > %s/input.gro' % (Kconfig.md_input_file, combined_path)] doesn't run, doesn't create combined_path/input.gro (line https://github.com/radical-collaboration/extasy-grlsd/blob/master/extasy_tica.py#L48)

euhruska commented 6 years ago

solved by rewriting whole unit