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radical-collaboration / extasy-grlsd

Repository to hold the input data and scripts for the ExTASY gromacs-lsdmap work
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pilot cancelled why? #63

Closed euhruska closed 6 years ago

euhruska commented 6 years ago

what does this mean? I don't see any error anywhere

2018-08-10 13:19:52,515: radical.entk.resource_manager.0000: MainProcess                     : MainThread     : WARNING : ru.get_logger() is deprecated
, use ru.Logger()
2018-08-10 13:19:52,575: radical.entk.appmanager.0000: MainProcess                     : MainThread     : INFO    : Workflow assigned to Application Ma
nager
2018-08-10 13:19:52,576: radical.entk.appmanager.0000: MainProcess                     : MainThread     : INFO    : Setting up RabbitMQ system
2018-08-10 13:19:56,506: radical.entk.wfprocessor.0000: MainProcess                     : MainThread     : INFO    : python.interpreter   version: 2.7.
14 |Anaconda, Inc.| (default, Nov 8 2017, 22:44:41) [GCC 7.2.0]
2018-08-10 13:19:56,506: radical.entk.wfprocessor.0000: MainProcess                     : MainThread     : INFO    :                      pid/tid: 1038
4/MainThread
2018-08-10 13:19:56,506: radical.entk.wfprocessor.0000: MainProcess                     : MainThread     : WARNING : ru.get_logger() is deprecated, use
 ru.Logger()
2018-08-10 13:19:56,564: radical.entk.wfprocessor.0000: MainProcess                     : MainThread     : INFO    : Created WFProcessor object: radica
l.entk.wfprocessor.0000
2018-08-10 13:19:56,564: radical.entk.appmanager.0000: MainProcess                     : MainThread     : INFO    : Starting resource request submissio
n
2018-08-10 13:20:03,734: radical.entk.resource_manager.0000: MainProcess                     : MainThread     : INFO    : Pilot pilot.0000 state: PMGR_
LAUNCHING_PENDING
2018-08-10 13:20:03,737: radical.entk.resource_manager.0000: MainProcess                     : pmgr.0000.subscriber._state_sub_cb: INFO    : Pilot pilo
t.0000 state: PMGR_LAUNCHING
2018-08-10 13:20:31,329: radical.entk.resource_manager.0000: MainProcess                     : pmgr.0000.subscriber._state_sub_cb: INFO    : Pilot pilo
t.0000 state: PMGR_ACTIVE_PENDING
2018-08-10 13:22:35,061: radical.entk.resource_manager.0000: MainProcess                     : pmgr.0000.subscriber._state_sub_cb: INFO    : Pilot pilo
t.0000 state: CANCELED

rp.session.leonardo.rice.edu.eh22.017753.0003

euhruska commented 6 years ago

apparently the ResourceManager.shared data doesn't allow '%s > %s/%s' % (args.Kconfig, combined_path, args.Kconfig) Is that correct?

vivek-bala commented 6 years ago

Hey Eugen, can you attach the version you are using? In the latest version (>= 0.7.0), note that the shared_data has been moved to the AppManager. See here

euhruska commented 6 years ago

radical-stack

  python               : 2.7.14
  pythonpath           :
  virtualenv           : extasy9

  radical.analytics    : v0.45.2-102-gaec2e1d@devel
  radical.entk         : 0.6.1-0.6.0-31-g19668b35@fix-extasy
  radical.pilot        : 0.47.14-v0.47.14-188-g72e97d30@fix-bw_python_interpreter
  radical.utils        : 0.50.1-v0.50.1-1-gce60836@devel
  saga                 : 0.47.6-v0.47.6-35-gf578245a@devel
andre-merzky commented 6 years ago

your RU, RS and RP versions are inconsistent - can you please make sure that all three of them are >0.50, please? The BW fixes are in the released versions by now.

euhruska commented 6 years ago

considering https://github.com/radical-collaboration/extasy-grlsd/issues/52 isn't solved and can't use devel entk, which entk version should I use? Can't find the 0.6.1-0.6.0-31-g19668b35@fix-extasy branch I used before

euhruska commented 6 years ago

solved by https://github.com/radical-collaboration/extasy-grlsd/issues/52