I have had the following errors while trying to submit jobs to XSEDE Stampede2.
python3: error while loading shared libraries: libpython3.7m.so.1.0: cannot open shared object file: No such file or directory
python3: error while loading shared libraries: libpython3.7m.so.1.0: cannot open shared object file: No such file or directory
Resetting modules to system default. Reseting $MODULEPATH back to system default. All extra directories will be removed from $MODULEPATH.
The following have been reloaded with a version change:
1) intel/18.0.0 => intel/18.0.2
python3: error while loading shared libraries: libpython3.7m.so.1.0: cannot open shared object file: No such file or directory
Lmod is automatically replacing "python2/2.7.15" with "python3/3.7.0".
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 5342592.0 ON c456-001 CANCELLED AT 2020-03-06T16:48:10 ***
srun: error: c456-001: task 0: Terminated
I have loaded python3 when I specified my jobs as follows:
I have had the following errors while trying to submit jobs to XSEDE Stampede2.
I have loaded
python3
when I specified my jobs as follows:In workflow_cfg.yml
Then in task_anen_gen.py
Please let me know how I can further debug this. Thank you.