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radical-cybertools / radical.repex.at

This is the github location for RepEx developed by the RADICAL team in conjunction with the York Lab.
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scheme 2a amber stalled #10

Closed marksantcroos closed 9 years ago

marksantcroos commented 10 years ago

python launch_simulation_scheme_2a_amber.py --input='config/amber_input.json'

[Callback]: ComputeUnit '54121361a85378a96f3e00db' state changed to Done. [Callback]: ComputeUnit '54121361a85378a96f3e00f1' state changed to StagingInput. [Callback]: ComputeUnit '54121361a85378a96f3e00f2' state changed to Done. [Callback]: ComputeUnit '54121361a85378a96f3e00ef' state changed to Done. [Callback]: ComputeUnit '54121361a85378a96f3e00f8' state changed to Done. [Callback]: ComputeUnit '54121361a85378a96f3e00e8' state changed to Done. [Callback]: ComputeUnit '54121361a85378a96f3e00e1' state changed to Done. [Callback]: ComputeUnit '54121361a85378a96f3e00f0' state changed to Done. [Callback]: ComputeUnit '54121361a85378a96f3e00e4' state changed to PendingExecution. [Callback]: ComputeUnit '54121361a85378a96f3e00e4' state changed to Scheduling. [Callback]: ComputeUnit '54121361a85378a96f3e00e6' state changed to StagingInput. [Callback]: ComputeUnit '54121361a85378a96f3e00e4' state changed to Executing. [Callback]: ComputeUnit '54121361a85378a96f3e00e4' state changed to StagingOutput. [Callback]: ComputeUnit '54121361a85378a96f3e00de' state changed to StagingInput. [Callback]: ComputeUnit '54121361a85378a96f3e00e4' state changed to Done. [Callback]: ComputeUnit '54121361a85378a96f3e00ec' state changed to PendingExecution. [Callback]: ComputeUnit '54121361a85378a96f3e00e9' state changed to StagingInput. [Callback]: ComputeUnit '54121361a85378a96f3e00ec' state changed to Scheduling. [Callback]: ComputeUnit '54121361a85378a96f3e00ec' state changed to Executing. [Callback]: ComputeUnit '54121361a85378a96f3e00ec' state changed to StagingOutput. [Callback]: ComputeUnit '54121361a85378a96f3e00df' state changed to StagingInput. [Callback]: ComputeUnit '54121361a85378a96f3e00ec' state changed to Done. [Callback]: ComputeUnit '54121361a85378a96f3e00dd' state changed to PendingExecution. [Callback]: ComputeUnit '54121361a85378a96f3e00f6' state changed to StagingInput. [Callback]: ComputeUnit '54121361a85378a96f3e00dd' state changed to Scheduling. [Callback]: ComputeUnit '54121361a85378a96f3e00dd' state changed to Executing. [Callback]: ComputeUnit '54121361a85378a96f3e00dd' state changed to StagingOutput. [Callback]: ComputeUnit '54121361a85378a96f3e00e5' state changed to StagingInput. [Callback]: ComputeUnit '54121361a85378a96f3e00dd' state changed to Done. [Callback]: ComputeUnit '54121361a85378a96f3e00ed' state changed to PendingExecution. [Callback]: ComputeUnit '54121361a85378a96f3e00f4' state changed to StagingInput. [Callback]: ComputeUnit '54121361a85378a96f3e00ed' state changed to Scheduling. [Callback]: ComputeUnit '54121361a85378a96f3e00ed' state changed to Executing. [Callback]: ComputeUnit '54121361a85378a96f3e00ed' state changed to StagingOutput. [Callback]: ComputeUnit '54121361a85378a96f3e00e0' state changed to StagingInput.

^CTraceback (most recent call last): File "launch_simulation_scheme_2a_amber.py", line 55, in pilot_kernel.run_simulation( replicas, pilot_object, session, md_kernel ) File "/Users/mark/myenv/lib/python2.7/site-packages/RepEx-0.1-py2.7.egg/pilot_kernels/pilot_kernel_scheme_2a.py", line 62, in run_simulation unit_manager.wait_units() File "/Users/mark/myenv/lib/python2.7/site-packages/radical.pilot-0.19-py2.7.egg/radical/pilot/unit_manager.py", line 669, in wait_units time.sleep (0.1) KeyboardInterrupt