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This is the github location for RepEx developed by the RADICAL team in conjunction with the York Lab.
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U dimension not exchanging (TUU) #28

Closed haoyuanchen closed 9 years ago

haoyuanchen commented 9 years ago

I ran a TUU simulation and I found that the two U dimensions remain the same during the simulation. The T dimension exchanged normally though. I then tried to run a longer simulation (10 cycles for each dimension) and make the umbrellas in each U dimension very close to each other (to increase the theoretical exchange probability) but the result is the same. Could you please check the exchange codes in the U dimension? Thanks!

Below is part of the input json file. You can see that in all the dimensions I set the range to be very small, so theoretically they should exchange very easily.

    "temperature_2": {
        "number_of_replicas": "2",
        "min_temperature": "300",
        "max_temperature": "301"
        },
    "umbrella_sampling_1": {
        "number_of_replicas": "2",
        "us_start_param": "150",
        "us_end_param": "151"
        },
    "umbrella_sampling_3": {
        "number_of_replicas": "2",
        "us_start_param": "160",
        "us_end_param": "161"
        }
antonst commented 9 years ago

Thanks! Will do!

antonst commented 9 years ago

I don't understand this ticket. I have just run the simulation and I can see exchanges being performed in both US dimensions:

2015:05:31 21:52:37 9505   MainThread   radical.repex.launcher-3d-TUU: [INFO    ] *********************************************************************
2015:05:31 21:52:37 9505   MainThread   radical.repex.launcher-3d-TUU: [INFO    ] *            RepEx simulation: AMBER + TUU + pattern B             *
2015:05:31 21:52:37 9505   MainThread   radical.repex.launcher-3d-TUU: [INFO    ] *********************************************************************
2015:05:31 21:52:37 9505   MainThread   radical.repex.pk      : [INFO    ] Using default Mongo DB url
2015:05:31 21:52:38 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Session ID: rp.session.antons-pc.antons.016587.0002
2015:05:31 21:52:41 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Pilot ID: pilot.0000
2015:05:31 21:52:43 9505   Thread-1     radical.repex.pk-patternB-multiD: [INFO    ] ComputePilot 'pilot.0000' state changed to Launching.
2015:05:31 21:52:53 9505   Thread-1     radical.repex.pk-patternB-multiD: [INFO    ] ComputePilot 'pilot.0000' state changed to PendingActive.
2015:05:31 22:08:49 9505   Thread-1     radical.repex.pk-patternB-multiD: [INFO    ] ComputePilot 'pilot.0000' state changed to Active.
2015:05:31 22:09:17 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 0 temp: 300.0 us1: 151.0  us3: 161.0
2015:05:31 22:09:17 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 1 temp: 300.0 us1: 151.0  us3: 162.0
2015:05:31 22:09:17 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 2 temp: 302.0 us1: 151.0  us3: 161.0
2015:05:31 22:09:17 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 3 temp: 302.0 us1: 151.0  us3: 162.0
2015:05:31 22:09:17 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 4 temp: 300.0 us1: 152.0  us3: 161.0
2015:05:31 22:09:17 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 5 temp: 300.0 us1: 152.0  us3: 162.0
2015:05:31 22:09:17 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 6 temp: 302.0 us1: 152.0  us3: 161.0
2015:05:31 22:09:17 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 7 temp: 302.0 us1: 152.0  us3: 162.0
2015:05:31 22:09:17 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Performing cycle: 0
2015:05:31 22:09:17 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: preparing 8 replicas for MD run; cycle 0
2015:05:31 22:09:17 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000000' state changed to StagingInput.
2015:05:31 22:09:17 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000001' state changed to PendingInputStaging.
2015:05:31 22:09:18 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: submitting 8 replicas for MD run; cycle 0
2015:05:31 22:09:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000001' state changed to StagingInput.
2015:05:31 22:09:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000002' state changed to StagingInput.
2015:05:31 22:09:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000003' state changed to StagingInput.
2015:05:31 22:09:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000004' state changed to StagingInput.
2015:05:31 22:09:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000005' state changed to StagingInput.
2015:05:31 22:09:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000006' state changed to StagingInput.
2015:05:31 22:09:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000007' state changed to PendingInputStaging.
2015:05:31 22:09:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000007' state changed to StagingInput.
2015:05:31 22:09:23 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000000' state changed to Allocating.
2015:05:31 22:09:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000000' state changed to Executing.
2015:05:31 22:09:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000001' state changed to Allocating.
2015:05:31 22:09:25 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000000' state changed to Done.
2015:05:31 22:09:25 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000001' state changed to Executing.
2015:05:31 22:09:25 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000002' state changed to Allocating.
2015:05:31 22:09:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000002' state changed to Executing.
2015:05:31 22:09:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000003' state changed to PendingExecution.
2015:05:31 22:09:27 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000001' state changed to Done.
2015:05:31 22:09:27 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000003' state changed to Allocating.
2015:05:31 22:09:27 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000004' state changed to PendingExecution.
2015:05:31 22:09:36 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000002' state changed to Done.
2015:05:31 22:09:36 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000003' state changed to Done.
2015:05:31 22:09:36 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000004' state changed to Done.
2015:05:31 22:09:36 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000005' state changed to Done.
2015:05:31 22:09:36 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000006' state changed to Done.
2015:05:31 22:09:36 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000007' state changed to Done.
2015:05:31 22:09:36 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: preparing 8 replicas for Exchange run; cycle 0
2015:05:31 22:09:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000008' state changed to StagingInput.
2015:05:31 22:09:37 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: submitting 8 replicas for Exchange run; cycle 0
2015:05:31 22:09:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000009' state changed to StagingInput.
2015:05:31 22:09:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000010' state changed to StagingInput.
2015:05:31 22:09:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000011' state changed to StagingInput.
2015:05:31 22:09:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000012' state changed to PendingInputStaging.
2015:05:31 22:09:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000013' state changed to PendingInputStaging.
2015:05:31 22:09:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000014' state changed to PendingInputStaging.
2015:05:31 22:09:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000015' state changed to PendingInputStaging.
2015:05:31 22:09:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000012' state changed to StagingInput.
2015:05:31 22:09:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000013' state changed to StagingInput.
2015:05:31 22:09:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000014' state changed to StagingInput.
2015:05:31 22:09:39 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000008' state changed to Allocating.
2015:05:31 22:09:39 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000015' state changed to StagingInput.
2015:05:31 22:09:40 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000008' state changed to Executing.
2015:05:31 22:09:40 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000009' state changed to PendingExecution.
2015:05:31 22:09:40 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000008' state changed to StagingOutput.
2015:05:31 22:09:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000009' state changed to StagingOutput.
2015:05:31 22:09:43 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000010' state changed to Allocating.
2015:05:31 22:09:44 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000010' state changed to StagingOutput.
2015:05:31 22:09:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000011' state changed to Allocating.
2015:05:31 22:09:46 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000011' state changed to StagingOutput.
2015:05:31 22:09:46 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000012' state changed to Executing.
2015:05:31 22:09:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000008' state changed to Done.
2015:05:31 22:09:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000012' state changed to StagingOutput.
2015:05:31 22:09:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000013' state changed to Executing.
2015:05:31 22:09:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000009' state changed to Done.
2015:05:31 22:09:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000013' state changed to StagingOutput.
2015:05:31 22:09:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000014' state changed to Executing.
2015:05:31 22:09:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000015' state changed to PendingExecution.
2015:05:31 22:09:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000010' state changed to Done.
2015:05:31 22:09:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000014' state changed to StagingOutput.
2015:05:31 22:09:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000015' state changed to Executing.
2015:05:31 22:09:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000011' state changed to Done.
2015:05:31 22:09:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000015' state changed to StagingOutput.
2015:05:31 22:09:53 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000012' state changed to Done.
2015:05:31 22:09:54 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000013' state changed to Done.
2015:05:31 22:09:55 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000014' state changed to Done.
2015:05:31 22:09:56 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000015' state changed to Done.
2015:05:31 22:09:56 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: performing exchange
2015:05:31 22:09:56 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 0 temp: 300.0 us1: 151.0  us3: 161.0
2015:05:31 22:09:56 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 1 temp: 300.0 us1: 152.0  us3: 162.0
2015:05:31 22:09:56 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 2 temp: 302.0 us1: 152.0  us3: 161.0
2015:05:31 22:09:56 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 3 temp: 302.0 us1: 151.0  us3: 162.0
2015:05:31 22:09:56 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 4 temp: 300.0 us1: 152.0  us3: 161.0
2015:05:31 22:09:56 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 5 temp: 300.0 us1: 151.0  us3: 162.0
2015:05:31 22:09:56 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 6 temp: 302.0 us1: 151.0  us3: 161.0
2015:05:31 22:09:56 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 7 temp: 302.0 us1: 152.0  us3: 162.0
2015:05:31 22:09:56 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: preparing 8 replicas for MD run; cycle 0
2015:05:31 22:09:57 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: submitting 8 replicas for MD run; cycle 0
2015:05:31 22:09:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000016' state changed to StagingInput.
2015:05:31 22:09:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000017' state changed to StagingInput.
2015:05:31 22:09:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000018' state changed to StagingInput.
2015:05:31 22:09:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000019' state changed to StagingInput.
2015:05:31 22:09:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000020' state changed to PendingInputStaging.
2015:05:31 22:09:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000021' state changed to PendingInputStaging.
2015:05:31 22:09:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000022' state changed to PendingInputStaging.
2015:05:31 22:09:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000023' state changed to PendingInputStaging.
2015:05:31 22:09:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000020' state changed to StagingInput.
2015:05:31 22:09:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000021' state changed to StagingInput.
2015:05:31 22:09:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000022' state changed to StagingInput.
2015:05:31 22:09:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000023' state changed to StagingInput.
2015:05:31 22:09:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000016' state changed to PendingExecution.
2015:05:31 22:10:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000016' state changed to Allocating.
2015:05:31 22:10:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000016' state changed to Executing.
2015:05:31 22:10:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000017' state changed to PendingExecution.
2015:05:31 22:10:02 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000016' state changed to Done.
2015:05:31 22:10:02 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000017' state changed to Executing.
2015:05:31 22:10:02 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000018' state changed to PendingExecution.
2015:05:31 22:10:03 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000017' state changed to StagingOutput.
2015:05:31 22:10:03 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000018' state changed to Executing.
2015:05:31 22:10:04 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000017' state changed to Done.
2015:05:31 22:10:04 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000019' state changed to Allocating.
2015:05:31 22:10:04 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000020' state changed to PendingExecution.
2015:05:31 22:10:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000018' state changed to Done.
2015:05:31 22:10:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000019' state changed to Executing.
2015:05:31 22:10:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000020' state changed to Allocating.
2015:05:31 22:10:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000021' state changed to Allocating.
2015:05:31 22:10:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000019' state changed to Done.
2015:05:31 22:10:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000020' state changed to Executing.
2015:05:31 22:10:07 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000020' state changed to Done.
2015:05:31 22:10:07 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000021' state changed to Executing.
2015:05:31 22:10:07 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000022' state changed to Allocating.
2015:05:31 22:10:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000021' state changed to Done.
2015:05:31 22:10:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000022' state changed to Executing.
2015:05:31 22:10:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000023' state changed to Allocating.
2015:05:31 22:10:10 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000022' state changed to Done.
2015:05:31 22:10:10 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000023' state changed to Executing.
2015:05:31 22:10:11 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000023' state changed to Done.
2015:05:31 22:10:11 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: preparing 8 replicas for Exchange run; cycle 0
2015:05:31 22:10:12 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: submitting 8 replicas for Exchange run; cycle 0
2015:05:31 22:10:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000030' state changed to PendingInputStaging.
2015:05:31 22:10:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000025' state changed to StagingInput.
2015:05:31 22:10:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000026' state changed to StagingInput.
2015:05:31 22:10:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000027' state changed to StagingInput.
2015:05:31 22:10:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000028' state changed to StagingInput.
2015:05:31 22:10:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000029' state changed to StagingInput.
2015:05:31 22:10:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000024' state changed to StagingInput.
2015:05:31 22:10:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000031' state changed to PendingInputStaging.
2015:05:31 22:10:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000030' state changed to StagingInput.
2015:05:31 22:10:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000031' state changed to StagingInput.
2015:05:31 22:10:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000028' state changed to StagingOutput.
2015:05:31 22:10:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000027' state changed to StagingOutput.
2015:05:31 22:10:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000024' state changed to StagingOutput.
2015:05:31 22:10:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000025' state changed to StagingOutput.
2015:05:31 22:10:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000026' state changed to StagingOutput.
2015:05:31 22:10:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000029' state changed to StagingOutput.
2015:05:31 22:10:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000030' state changed to Executing.
2015:05:31 22:10:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000031' state changed to Executing.
2015:05:31 22:10:15 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000030' state changed to StagingOutput.
2015:05:31 22:10:15 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000031' state changed to StagingOutput.
2015:05:31 22:10:16 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000028' state changed to Done.
2015:05:31 22:10:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000027' state changed to Done.
2015:05:31 22:10:19 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000024' state changed to Done.
2015:05:31 22:10:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000025' state changed to Done.
2015:05:31 22:10:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000026' state changed to Done.
2015:05:31 22:10:23 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000029' state changed to Done.
2015:05:31 22:10:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000030' state changed to Done.
2015:05:31 22:10:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000031' state changed to Done.
2015:05:31 22:10:24 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: performing exchange
2015:05:31 22:10:24 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 0 temp: 302.0 us1: 151.0  us3: 161.0
2015:05:31 22:10:24 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 1 temp: 302.0 us1: 152.0  us3: 162.0
2015:05:31 22:10:24 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 2 temp: 300.0 us1: 152.0  us3: 161.0
2015:05:31 22:10:24 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 3 temp: 300.0 us1: 151.0  us3: 162.0
2015:05:31 22:10:24 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 4 temp: 302.0 us1: 152.0  us3: 161.0
2015:05:31 22:10:24 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 5 temp: 302.0 us1: 151.0  us3: 162.0
2015:05:31 22:10:24 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 6 temp: 300.0 us1: 151.0  us3: 161.0
2015:05:31 22:10:24 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 7 temp: 300.0 us1: 152.0  us3: 162.0
2015:05:31 22:10:24 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: preparing 8 replicas for MD run; cycle 0
2015:05:31 22:10:25 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: submitting 8 replicas for MD run; cycle 0
2015:05:31 22:10:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000032' state changed to StagingInput.
2015:05:31 22:10:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000033' state changed to StagingInput.
2015:05:31 22:10:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000034' state changed to StagingInput.
2015:05:31 22:10:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000035' state changed to StagingInput.
2015:05:31 22:10:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000036' state changed to StagingInput.
2015:05:31 22:10:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000037' state changed to PendingInputStaging.
2015:05:31 22:10:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000038' state changed to PendingInputStaging.
2015:05:31 22:10:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000039' state changed to PendingInputStaging.
2015:05:31 22:10:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000037' state changed to StagingInput.
2015:05:31 22:10:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000038' state changed to StagingInput.
2015:05:31 22:10:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000039' state changed to StagingInput.
2015:05:31 22:10:28 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000032' state changed to Allocating.
2015:05:31 22:10:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000032' state changed to Executing.
2015:05:31 22:10:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000033' state changed to Allocating.
2015:05:31 22:10:31 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000032' state changed to Done.
2015:05:31 22:10:31 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000033' state changed to Executing.
2015:05:31 22:10:31 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000034' state changed to Allocating.
2015:05:31 22:10:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000033' state changed to Done.
2015:05:31 22:10:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000034' state changed to Executing.
2015:05:31 22:10:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000035' state changed to Allocating.
2015:05:31 22:10:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000035' state changed to Executing.
2015:05:31 22:10:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000034' state changed to Done.
2015:05:31 22:10:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000036' state changed to Executing.
2015:05:31 22:10:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000037' state changed to PendingExecution.
2015:05:31 22:10:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000037' state changed to Allocating.
2015:05:31 22:10:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000035' state changed to Done.
2015:05:31 22:10:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000037' state changed to Executing.
2015:05:31 22:10:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000038' state changed to Allocating.
2015:05:31 22:10:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000036' state changed to Done.
2015:05:31 22:10:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000038' state changed to Executing.
2015:05:31 22:10:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000039' state changed to Allocating.
2015:05:31 22:10:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000037' state changed to Done.
2015:05:31 22:10:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000039' state changed to Executing.
2015:05:31 22:10:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000038' state changed to Done.
2015:05:31 22:10:39 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000039' state changed to Done.
2015:05:31 22:10:39 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: preparing 8 replicas for Exchange run; cycle 0
2015:05:31 22:10:41 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: submitting 8 replicas for Exchange run; cycle 0
2015:05:31 22:10:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000040' state changed to StagingInput.
2015:05:31 22:10:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000041' state changed to StagingInput.
2015:05:31 22:10:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000042' state changed to StagingInput.
2015:05:31 22:10:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000043' state changed to StagingInput.
2015:05:31 22:10:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000044' state changed to StagingInput.
2015:05:31 22:10:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000045' state changed to StagingInput.
2015:05:31 22:10:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000046' state changed to PendingInputStaging.
2015:05:31 22:10:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000047' state changed to PendingInputStaging.
2015:05:31 22:10:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000046' state changed to StagingInput.
2015:05:31 22:10:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000047' state changed to StagingInput.
2015:05:31 22:10:44 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000040' state changed to Allocating.
2015:05:31 22:10:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000040' state changed to StagingOutput.
2015:05:31 22:10:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000041' state changed to Allocating.
2015:05:31 22:10:46 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000041' state changed to StagingOutput.
2015:05:31 22:10:46 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000042' state changed to Allocating.
2015:05:31 22:10:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000040' state changed to Done.
2015:05:31 22:10:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000042' state changed to Executing.
2015:05:31 22:10:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000043' state changed to Allocating.
2015:05:31 22:10:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000042' state changed to StagingOutput.
2015:05:31 22:10:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000043' state changed to Executing.
2015:05:31 22:10:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000043' state changed to StagingOutput.
2015:05:31 22:10:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000044' state changed to Executing.
2015:05:31 22:10:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000045' state changed to PendingExecution.
2015:05:31 22:10:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000045' state changed to Allocating.
2015:05:31 22:10:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000041' state changed to Done.
2015:05:31 22:10:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000042' state changed to Done.
2015:05:31 22:10:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000044' state changed to StagingOutput.
2015:05:31 22:10:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000045' state changed to Executing.
2015:05:31 22:10:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000046' state changed to Allocating.
2015:05:31 22:10:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000045' state changed to StagingOutput.
2015:05:31 22:10:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000046' state changed to Executing.
2015:05:31 22:10:53 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000043' state changed to Done.
2015:05:31 22:10:53 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000046' state changed to StagingOutput.
2015:05:31 22:10:53 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000047' state changed to Executing.
2015:05:31 22:10:54 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000044' state changed to Done.
2015:05:31 22:10:54 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000047' state changed to StagingOutput.
2015:05:31 22:10:55 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000045' state changed to Done.
2015:05:31 22:10:57 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000046' state changed to Done.
2015:05:31 22:10:57 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000047' state changed to Done.
2015:05:31 22:10:57 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: performing exchange
2015:05:31 22:10:57 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 0 temp: 302.0 us1: 151.0  us3: 162.0
2015:05:31 22:10:57 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 1 temp: 302.0 us1: 152.0  us3: 162.0
2015:05:31 22:10:57 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 2 temp: 300.0 us1: 152.0  us3: 162.0
2015:05:31 22:10:57 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 3 temp: 300.0 us1: 151.0  us3: 162.0
2015:05:31 22:10:57 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 4 temp: 302.0 us1: 152.0  us3: 161.0
2015:05:31 22:10:57 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 5 temp: 302.0 us1: 151.0  us3: 161.0
2015:05:31 22:10:57 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 6 temp: 300.0 us1: 151.0  us3: 161.0
2015:05:31 22:10:57 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 7 temp: 300.0 us1: 152.0  us3: 161.0
2015:05:31 22:10:57 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Performing cycle: 1
2015:05:31 22:10:57 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: preparing 8 replicas for MD run; cycle 1
2015:05:31 22:10:58 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: submitting 8 replicas for MD run; cycle 1
2015:05:31 22:10:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000048' state changed to StagingInput.
2015:05:31 22:10:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000049' state changed to StagingInput.
2015:05:31 22:10:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000050' state changed to StagingInput.
2015:05:31 22:10:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000051' state changed to StagingInput.
2015:05:31 22:10:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000052' state changed to StagingInput.
2015:05:31 22:10:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000053' state changed to StagingInput.
2015:05:31 22:10:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000054' state changed to StagingInput.
2015:05:31 22:10:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000055' state changed to PendingInputStaging.
2015:05:31 22:11:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000055' state changed to StagingInput.
2015:05:31 22:11:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000048' state changed to Allocating.
2015:05:31 22:11:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000048' state changed to Executing.
2015:05:31 22:11:02 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000049' state changed to Allocating.
2015:05:31 22:11:03 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000048' state changed to Done.
2015:05:31 22:11:03 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000049' state changed to Executing.
2015:05:31 22:11:03 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000050' state changed to Allocating.
2015:05:31 22:11:04 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000049' state changed to Done.
2015:05:31 22:11:05 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000050' state changed to Executing.
2015:05:31 22:11:05 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000051' state changed to Allocating.
2015:05:31 22:11:05 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000050' state changed to Done.
2015:05:31 22:11:05 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000051' state changed to Executing.
2015:05:31 22:11:05 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000052' state changed to PendingExecution.
2015:05:31 22:11:05 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000052' state changed to Allocating.
2015:05:31 22:11:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000052' state changed to Executing.
2015:05:31 22:11:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000053' state changed to Allocating.
2015:05:31 22:11:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000051' state changed to Done.
2015:05:31 22:11:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000053' state changed to Executing.
2015:05:31 22:11:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000054' state changed to Allocating.
2015:05:31 22:11:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000052' state changed to Done.
2015:05:31 22:11:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000054' state changed to Executing.
2015:05:31 22:11:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000055' state changed to PendingExecution.
2015:05:31 22:11:10 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000053' state changed to Done.
2015:05:31 22:11:10 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000055' state changed to Executing.
2015:05:31 22:11:11 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000054' state changed to Done.
2015:05:31 22:11:11 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000055' state changed to Done.
2015:05:31 22:11:11 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: preparing 8 replicas for Exchange run; cycle 1
2015:05:31 22:11:12 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: submitting 8 replicas for Exchange run; cycle 1
2015:05:31 22:11:13 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000056' state changed to StagingInput.
2015:05:31 22:11:13 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000057' state changed to StagingInput.
2015:05:31 22:11:13 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000058' state changed to StagingInput.
2015:05:31 22:11:13 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000059' state changed to StagingInput.
2015:05:31 22:11:13 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000060' state changed to StagingInput.
2015:05:31 22:11:13 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000061' state changed to StagingInput.
2015:05:31 22:11:13 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000062' state changed to StagingInput.
2015:05:31 22:11:13 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000063' state changed to PendingInputStaging.
2015:05:31 22:11:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000056' state changed to Allocating.
2015:05:31 22:11:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000063' state changed to StagingInput.
2015:05:31 22:11:16 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000056' state changed to StagingOutput.
2015:05:31 22:11:16 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000057' state changed to Allocating.
2015:05:31 22:11:17 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000056' state changed to Done.
2015:05:31 22:11:17 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000057' state changed to StagingOutput.
2015:05:31 22:11:17 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000058' state changed to Allocating.
2015:05:31 22:11:19 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000057' state changed to Done.
2015:05:31 22:11:19 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000058' state changed to StagingOutput.
2015:05:31 22:11:19 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000059' state changed to Allocating.
2015:05:31 22:11:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000059' state changed to StagingOutput.
2015:05:31 22:11:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000060' state changed to Allocating.
2015:05:31 22:11:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000061' state changed to PendingExecution.
2015:05:31 22:11:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000060' state changed to StagingOutput.
2015:05:31 22:11:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000061' state changed to Allocating.
2015:05:31 22:11:22 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000058' state changed to Done.
2015:05:31 22:11:22 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000061' state changed to StagingOutput.
2015:05:31 22:11:22 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000062' state changed to Allocating.
2015:05:31 22:11:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000059' state changed to Done.
2015:05:31 22:11:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000062' state changed to StagingOutput.
2015:05:31 22:11:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000063' state changed to Allocating.
2015:05:31 22:11:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000063' state changed to StagingOutput.
2015:05:31 22:11:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000060' state changed to Done.
2015:05:31 22:11:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000061' state changed to Done.
2015:05:31 22:11:27 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000062' state changed to Done.
2015:05:31 22:11:29 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000063' state changed to Done.
2015:05:31 22:11:29 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: performing exchange
2015:05:31 22:11:29 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 0 temp: 302.0 us1: 152.0  us3: 162.0
2015:05:31 22:11:29 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 1 temp: 302.0 us1: 151.0  us3: 162.0
2015:05:31 22:11:29 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 2 temp: 300.0 us1: 151.0  us3: 162.0
2015:05:31 22:11:29 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 3 temp: 300.0 us1: 152.0  us3: 162.0
2015:05:31 22:11:29 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 4 temp: 302.0 us1: 151.0  us3: 161.0
2015:05:31 22:11:29 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 5 temp: 302.0 us1: 152.0  us3: 161.0
2015:05:31 22:11:29 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 6 temp: 300.0 us1: 152.0  us3: 161.0
2015:05:31 22:11:29 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 7 temp: 300.0 us1: 151.0  us3: 161.0
2015:05:31 22:11:29 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: preparing 8 replicas for MD run; cycle 1
2015:05:31 22:11:30 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: submitting 8 replicas for MD run; cycle 1
2015:05:31 22:11:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000064' state changed to StagingInput.
2015:05:31 22:11:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000065' state changed to StagingInput.
2015:05:31 22:11:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000066' state changed to StagingInput.
2015:05:31 22:11:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000067' state changed to StagingInput.
2015:05:31 22:11:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000068' state changed to StagingInput.
2015:05:31 22:11:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000069' state changed to StagingInput.
2015:05:31 22:11:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000070' state changed to StagingInput.
2015:05:31 22:11:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000071' state changed to PendingInputStaging.
2015:05:31 22:11:31 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000071' state changed to StagingInput.
2015:05:31 22:11:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000064' state changed to Allocating.
2015:05:31 22:11:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000064' state changed to Executing.
2015:05:31 22:11:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000065' state changed to Allocating.
2015:05:31 22:11:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000064' state changed to Done.
2015:05:31 22:11:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000065' state changed to Executing.
2015:05:31 22:11:36 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000066' state changed to Executing.
2015:05:31 22:11:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000065' state changed to Done.
2015:05:31 22:11:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000067' state changed to Allocating.
2015:05:31 22:11:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000068' state changed to PendingExecution.
2015:05:31 22:11:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000066' state changed to Done.
2015:05:31 22:11:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000067' state changed to Executing.
2015:05:31 22:11:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000068' state changed to Allocating.
2015:05:31 22:11:39 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000067' state changed to Done.
2015:05:31 22:11:39 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000068' state changed to Executing.
2015:05:31 22:11:39 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000069' state changed to Allocating.
2015:05:31 22:11:39 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000070' state changed to PendingExecution.
2015:05:31 22:11:40 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000068' state changed to StagingOutput.
2015:05:31 22:11:40 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000069' state changed to Executing.
2015:05:31 22:11:40 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000068' state changed to Done.
2015:05:31 22:11:40 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000070' state changed to Allocating.
2015:05:31 22:11:42 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000069' state changed to Done.
2015:05:31 22:11:42 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000070' state changed to Executing.
2015:05:31 22:11:42 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000071' state changed to Allocating.
2015:05:31 22:11:42 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000071' state changed to Executing.
2015:05:31 22:11:44 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000070' state changed to Done.
2015:05:31 22:11:44 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000071' state changed to Done.
2015:05:31 22:11:44 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: preparing 8 replicas for Exchange run; cycle 1
2015:05:31 22:11:45 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: submitting 8 replicas for Exchange run; cycle 1
2015:05:31 22:11:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000073' state changed to StagingInput.
2015:05:31 22:11:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000079' state changed to PendingInputStaging.
2015:05:31 22:11:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000074' state changed to StagingInput.
2015:05:31 22:11:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000075' state changed to StagingInput.
2015:05:31 22:11:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000072' state changed to StagingInput.
2015:05:31 22:11:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000076' state changed to StagingInput.
2015:05:31 22:11:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000077' state changed to StagingInput.
2015:05:31 22:11:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000078' state changed to StagingInput.
2015:05:31 22:11:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000072' state changed to StagingOutput.
2015:05:31 22:11:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000073' state changed to StagingOutput.
2015:05:31 22:11:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000074' state changed to StagingOutput.
2015:05:31 22:11:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000075' state changed to StagingOutput.
2015:05:31 22:11:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000076' state changed to StagingOutput.
2015:05:31 22:11:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000077' state changed to StagingOutput.
2015:05:31 22:11:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000078' state changed to StagingOutput.
2015:05:31 22:11:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000079' state changed to StagingOutput.
2015:05:31 22:11:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000072' state changed to Done.
2015:05:31 22:11:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000073' state changed to Done.
2015:05:31 22:11:52 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000074' state changed to Done.
2015:05:31 22:11:54 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000075' state changed to Done.
2015:05:31 22:11:54 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000076' state changed to Done.
2015:05:31 22:11:56 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000077' state changed to Done.
2015:05:31 22:11:57 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000078' state changed to Done.
2015:05:31 22:11:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000079' state changed to Done.
2015:05:31 22:11:58 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: performing exchange
2015:05:31 22:11:58 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 0 temp: 300.0 us1: 152.0  us3: 162.0
2015:05:31 22:11:58 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 1 temp: 300.0 us1: 151.0  us3: 162.0
2015:05:31 22:11:58 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 2 temp: 302.0 us1: 151.0  us3: 162.0
2015:05:31 22:11:58 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 3 temp: 302.0 us1: 152.0  us3: 162.0
2015:05:31 22:11:58 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 4 temp: 300.0 us1: 151.0  us3: 161.0
2015:05:31 22:11:58 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 5 temp: 300.0 us1: 152.0  us3: 161.0
2015:05:31 22:11:58 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 6 temp: 302.0 us1: 152.0  us3: 161.0
2015:05:31 22:11:58 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 7 temp: 302.0 us1: 151.0  us3: 161.0
2015:05:31 22:11:58 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: preparing 8 replicas for MD run; cycle 1
2015:05:31 22:11:59 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: submitting 8 replicas for MD run; cycle 1
2015:05:31 22:11:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000080' state changed to StagingInput.
2015:05:31 22:11:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000081' state changed to StagingInput.
2015:05:31 22:11:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000082' state changed to StagingInput.
2015:05:31 22:11:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000083' state changed to StagingInput.
2015:05:31 22:11:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000084' state changed to StagingInput.
2015:05:31 22:11:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000085' state changed to PendingInputStaging.
2015:05:31 22:11:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000086' state changed to PendingInputStaging.
2015:05:31 22:11:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000087' state changed to PendingInputStaging.
2015:05:31 22:12:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000085' state changed to StagingInput.
2015:05:31 22:12:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000086' state changed to StagingInput.
2015:05:31 22:12:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000087' state changed to StagingInput.
2015:05:31 22:12:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000080' state changed to PendingExecution.
2015:05:31 22:12:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000080' state changed to Allocating.
2015:05:31 22:12:01 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000080' state changed to Executing.
2015:05:31 22:12:03 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000080' state changed to StagingOutput.
2015:05:31 22:12:03 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000081' state changed to Allocating.
2015:05:31 22:12:03 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000080' state changed to Done.
2015:05:31 22:12:03 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000081' state changed to Executing.
2015:05:31 22:12:03 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000082' state changed to PendingExecution.
2015:05:31 22:12:04 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000082' state changed to Allocating.
2015:05:31 22:12:05 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000081' state changed to Done.
2015:05:31 22:12:05 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000082' state changed to Executing.
2015:05:31 22:12:05 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000083' state changed to Allocating.
2015:05:31 22:12:07 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000082' state changed to Done.
2015:05:31 22:12:07 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000083' state changed to Executing.
2015:05:31 22:12:07 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000084' state changed to Executing.
2015:05:31 22:12:07 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000085' state changed to PendingExecution.
2015:05:31 22:12:07 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000085' state changed to Allocating.
2015:05:31 22:12:07 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000083' state changed to Done.
2015:05:31 22:12:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000085' state changed to Executing.
2015:05:31 22:12:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000086' state changed to PendingExecution.
2015:05:31 22:12:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000086' state changed to Allocating.
2015:05:31 22:12:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000084' state changed to Done.
2015:05:31 22:12:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000086' state changed to Executing.
2015:05:31 22:12:10 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000085' state changed to Done.
2015:05:31 22:12:10 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000087' state changed to Executing.
2015:05:31 22:12:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000086' state changed to Done.
2015:05:31 22:12:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000087' state changed to Done.
2015:05:31 22:12:12 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: preparing 8 replicas for Exchange run; cycle 1
2015:05:31 22:12:13 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: submitting 8 replicas for Exchange run; cycle 1
2015:05:31 22:12:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000088' state changed to StagingInput.
2015:05:31 22:12:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000089' state changed to StagingInput.
2015:05:31 22:12:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000090' state changed to StagingInput.
2015:05:31 22:12:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000091' state changed to StagingInput.
2015:05:31 22:12:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000092' state changed to StagingInput.
2015:05:31 22:12:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000093' state changed to StagingInput.
2015:05:31 22:12:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000094' state changed to StagingInput.
2015:05:31 22:12:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000095' state changed to PendingInputStaging.
2015:05:31 22:12:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000095' state changed to StagingInput.
2015:05:31 22:12:16 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000088' state changed to Allocating.
2015:05:31 22:12:16 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000088' state changed to StagingOutput.
2015:05:31 22:12:17 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000089' state changed to PendingExecution.
2015:05:31 22:12:17 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000089' state changed to Allocating.
2015:05:31 22:12:17 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000089' state changed to Executing.
2015:05:31 22:12:19 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000089' state changed to StagingOutput.
2015:05:31 22:12:19 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000090' state changed to Allocating.
2015:05:31 22:12:19 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000088' state changed to Done.
2015:05:31 22:12:19 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000090' state changed to StagingOutput.
2015:05:31 22:12:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000091' state changed to Allocating.
2015:05:31 22:12:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000091' state changed to StagingOutput.
2015:05:31 22:12:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000092' state changed to Allocating.
2015:05:31 22:12:22 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000092' state changed to StagingOutput.
2015:05:31 22:12:22 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000093' state changed to PendingExecution.
2015:05:31 22:12:22 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000089' state changed to Done.
2015:05:31 22:12:22 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000093' state changed to Allocating.
2015:05:31 22:12:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000090' state changed to Done.
2015:05:31 22:12:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000093' state changed to StagingOutput.
2015:05:31 22:12:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000094' state changed to Executing.
2015:05:31 22:12:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000095' state changed to Allocating.
2015:05:31 22:12:25 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000091' state changed to Done.
2015:05:31 22:12:25 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000094' state changed to StagingOutput.
2015:05:31 22:12:25 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000095' state changed to Executing.
2015:05:31 22:12:27 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000092' state changed to Done.
2015:05:31 22:12:27 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000095' state changed to StagingOutput.
2015:05:31 22:12:28 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000093' state changed to Done.
2015:05:31 22:12:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000094' state changed to Done.
2015:05:31 22:12:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000095' state changed to Done.
2015:05:31 22:12:30 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: performing exchange
2015:05:31 22:12:30 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 0 temp: 300.0 us1: 152.0  us3: 161.0
2015:05:31 22:12:30 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 1 temp: 300.0 us1: 151.0  us3: 161.0
2015:05:31 22:12:30 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 2 temp: 302.0 us1: 151.0  us3: 161.0
2015:05:31 22:12:30 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 3 temp: 302.0 us1: 152.0  us3: 161.0
2015:05:31 22:12:30 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 4 temp: 300.0 us1: 151.0  us3: 162.0
2015:05:31 22:12:30 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 5 temp: 300.0 us1: 152.0  us3: 162.0
2015:05:31 22:12:30 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 6 temp: 302.0 us1: 152.0  us3: 162.0
2015:05:31 22:12:30 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 7 temp: 302.0 us1: 151.0  us3: 162.0
2015:05:31 22:12:30 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Performing cycle: 2
2015:05:31 22:12:30 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: preparing 8 replicas for MD run; cycle 2
2015:05:31 22:12:31 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: submitting 8 replicas for MD run; cycle 2
2015:05:31 22:12:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000096' state changed to StagingInput.
2015:05:31 22:12:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000097' state changed to StagingInput.
2015:05:31 22:12:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000098' state changed to StagingInput.
2015:05:31 22:12:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000099' state changed to StagingInput.
2015:05:31 22:12:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000100' state changed to StagingInput.
2015:05:31 22:12:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000101' state changed to StagingInput.
2015:05:31 22:12:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000102' state changed to StagingInput.
2015:05:31 22:12:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000103' state changed to PendingInputStaging.
2015:05:31 22:12:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000103' state changed to StagingInput.
2015:05:31 22:12:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000096' state changed to Executing.
2015:05:31 22:12:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000097' state changed to PendingExecution.
2015:05:31 22:12:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000097' state changed to Allocating.
2015:05:31 22:12:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000096' state changed to Done.
2015:05:31 22:12:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000097' state changed to Executing.
2015:05:31 22:12:36 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000098' state changed to PendingExecution.
2015:05:31 22:12:36 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000098' state changed to Executing.
2015:05:31 22:12:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000097' state changed to Done.
2015:05:31 22:12:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000099' state changed to Allocating.
2015:05:31 22:12:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000098' state changed to Done.
2015:05:31 22:12:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000099' state changed to Executing.
2015:05:31 22:12:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000100' state changed to PendingExecution.
2015:05:31 22:12:39 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000100' state changed to Allocating.
2015:05:31 22:12:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000099' state changed to Done.
2015:05:31 22:12:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000100' state changed to Done.
2015:05:31 22:12:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000101' state changed to Executing.
2015:05:31 22:12:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000102' state changed to PendingExecution.
2015:05:31 22:12:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000102' state changed to Allocating.
2015:05:31 22:12:43 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000101' state changed to Done.
2015:05:31 22:12:43 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000102' state changed to Done.
2015:05:31 22:12:43 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000103' state changed to Executing.
2015:05:31 22:12:46 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000103' state changed to Done.
2015:05:31 22:12:46 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: preparing 8 replicas for Exchange run; cycle 2
2015:05:31 22:12:46 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000104' state changed to PendingInputStaging.
2015:05:31 22:12:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000104' state changed to StagingInput.
2015:05:31 22:12:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000105' state changed to StagingInput.
2015:05:31 22:12:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000106' state changed to PendingInputStaging.
2015:05:31 22:12:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000106' state changed to StagingInput.
2015:05:31 22:12:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000107' state changed to PendingInputStaging.
2015:05:31 22:12:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000107' state changed to StagingInput.
2015:05:31 22:12:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000108' state changed to StagingInput.
2015:05:31 22:12:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000109' state changed to PendingInputStaging.
2015:05:31 22:12:48 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: submitting 8 replicas for Exchange run; cycle 2
2015:05:31 22:12:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000109' state changed to StagingInput.
2015:05:31 22:12:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000110' state changed to StagingInput.
2015:05:31 22:12:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000111' state changed to StagingInput.
2015:05:31 22:12:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000104' state changed to Allocating.
2015:05:31 22:12:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000104' state changed to StagingOutput.
2015:05:31 22:12:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000105' state changed to Allocating.
2015:05:31 22:12:53 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000104' state changed to Done.
2015:05:31 22:12:53 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000105' state changed to StagingOutput.
2015:05:31 22:12:53 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000106' state changed to Executing.
2015:05:31 22:12:54 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000105' state changed to Done.
2015:05:31 22:12:55 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000106' state changed to StagingOutput.
2015:05:31 22:12:55 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000107' state changed to Allocating.
2015:05:31 22:12:55 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000107' state changed to StagingOutput.
2015:05:31 22:12:55 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000108' state changed to Allocating.
2015:05:31 22:12:56 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000108' state changed to StagingOutput.
2015:05:31 22:12:56 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000109' state changed to Allocating.
2015:05:31 22:12:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000106' state changed to Done.
2015:05:31 22:12:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000109' state changed to StagingOutput.
2015:05:31 22:12:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000110' state changed to Executing.
2015:05:31 22:12:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000107' state changed to Done.
2015:05:31 22:12:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000111' state changed to Allocating.
2015:05:31 22:12:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000110' state changed to StagingOutput.
2015:05:31 22:12:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000111' state changed to Executing.
2015:05:31 22:13:01 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000108' state changed to Done.
2015:05:31 22:13:01 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000111' state changed to StagingOutput.
2015:05:31 22:13:02 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000109' state changed to Done.
2015:05:31 22:13:04 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000110' state changed to Done.
2015:05:31 22:13:04 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000111' state changed to Done.
2015:05:31 22:13:04 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: performing exchange
2015:05:31 22:13:04 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 0 temp: 300.0 us1: 151.0  us3: 161.0
2015:05:31 22:13:04 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 1 temp: 300.0 us1: 152.0  us3: 161.0
2015:05:31 22:13:04 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 2 temp: 302.0 us1: 151.0  us3: 161.0
2015:05:31 22:13:04 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 3 temp: 302.0 us1: 152.0  us3: 161.0
2015:05:31 22:13:04 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 4 temp: 300.0 us1: 152.0  us3: 162.0
2015:05:31 22:13:04 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 5 temp: 300.0 us1: 151.0  us3: 162.0
2015:05:31 22:13:04 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 6 temp: 302.0 us1: 152.0  us3: 162.0
2015:05:31 22:13:04 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 7 temp: 302.0 us1: 151.0  us3: 162.0
2015:05:31 22:13:04 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: preparing 8 replicas for MD run; cycle 2
2015:05:31 22:13:05 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: submitting 8 replicas for MD run; cycle 2
2015:05:31 22:13:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000112' state changed to StagingInput.
2015:05:31 22:13:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000113' state changed to StagingInput.
2015:05:31 22:13:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000114' state changed to StagingInput.
2015:05:31 22:13:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000115' state changed to StagingInput.
2015:05:31 22:13:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000116' state changed to StagingInput.
2015:05:31 22:13:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000117' state changed to StagingInput.
2015:05:31 22:13:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000118' state changed to StagingInput.
2015:05:31 22:13:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000119' state changed to PendingInputStaging.
2015:05:31 22:13:07 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000119' state changed to StagingInput.
2015:05:31 22:13:07 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000112' state changed to Allocating.
2015:05:31 22:13:07 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000112' state changed to Executing.
2015:05:31 22:13:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000113' state changed to PendingExecution.
2015:05:31 22:13:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000113' state changed to Executing.
2015:05:31 22:13:10 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000112' state changed to Done.
2015:05:31 22:13:10 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000114' state changed to Allocating.
2015:05:31 22:13:11 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000113' state changed to Done.
2015:05:31 22:13:11 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000114' state changed to Executing.
2015:05:31 22:13:11 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000115' state changed to PendingExecution.
2015:05:31 22:13:11 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000115' state changed to Allocating.
2015:05:31 22:13:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000115' state changed to Executing.
2015:05:31 22:13:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000116' state changed to PendingExecution.
2015:05:31 22:13:12 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000116' state changed to Allocating.
2015:05:31 22:13:13 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000114' state changed to Done.
2015:05:31 22:13:13 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000116' state changed to Executing.
2015:05:31 22:13:13 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000117' state changed to PendingExecution.
2015:05:31 22:13:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000117' state changed to Allocating.
2015:05:31 22:13:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000115' state changed to Done.
2015:05:31 22:13:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000117' state changed to Executing.
2015:05:31 22:13:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000118' state changed to PendingExecution.
2015:05:31 22:13:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000118' state changed to Allocating.
2015:05:31 22:13:15 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000116' state changed to Done.
2015:05:31 22:13:15 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000118' state changed to Executing.
2015:05:31 22:13:15 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000119' state changed to PendingExecution.
2015:05:31 22:13:16 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000117' state changed to Done.
2015:05:31 22:13:16 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000119' state changed to Executing.
2015:05:31 22:13:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000118' state changed to Done.
2015:05:31 22:13:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000119' state changed to Done.
2015:05:31 22:13:18 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: preparing 8 replicas for Exchange run; cycle 2
2015:05:31 22:13:19 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: submitting 8 replicas for Exchange run; cycle 2
2015:05:31 22:13:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000127' state changed to StagingInput.
2015:05:31 22:13:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000125' state changed to StagingInput.
2015:05:31 22:13:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000121' state changed to StagingInput.
2015:05:31 22:13:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000122' state changed to StagingInput.
2015:05:31 22:13:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000123' state changed to StagingInput.
2015:05:31 22:13:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000124' state changed to StagingInput.
2015:05:31 22:13:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000120' state changed to Executing.
2015:05:31 22:13:20 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000126' state changed to StagingInput.
2015:05:31 22:13:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000120' state changed to StagingOutput.
2015:05:31 22:13:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000121' state changed to StagingOutput.
2015:05:31 22:13:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000122' state changed to StagingOutput.
2015:05:31 22:13:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000123' state changed to StagingOutput.
2015:05:31 22:13:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000125' state changed to Executing.
2015:05:31 22:13:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000124' state changed to Executing.
2015:05:31 22:13:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000126' state changed to Executing.
2015:05:31 22:13:23 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000120' state changed to Done.
2015:05:31 22:13:23 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000125' state changed to StagingOutput.
2015:05:31 22:13:23 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000124' state changed to StagingOutput.
2015:05:31 22:13:23 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000126' state changed to StagingOutput.
2015:05:31 22:13:23 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000127' state changed to StagingOutput.
2015:05:31 22:13:25 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000121' state changed to Done.
2015:05:31 22:13:27 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000122' state changed to Done.
2015:05:31 22:13:29 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000123' state changed to Done.
2015:05:31 22:13:29 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000125' state changed to Done.
2015:05:31 22:13:31 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000124' state changed to Done.
2015:05:31 22:13:31 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000126' state changed to Done.
2015:05:31 22:13:33 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000127' state changed to Done.
2015:05:31 22:13:33 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: performing exchange
2015:05:31 22:13:33 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 0 temp: 302.0 us1: 151.0  us3: 161.0
2015:05:31 22:13:33 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 1 temp: 302.0 us1: 152.0  us3: 161.0
2015:05:31 22:13:33 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 2 temp: 300.0 us1: 151.0  us3: 161.0
2015:05:31 22:13:33 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 3 temp: 300.0 us1: 152.0  us3: 161.0
2015:05:31 22:13:33 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 4 temp: 302.0 us1: 152.0  us3: 162.0
2015:05:31 22:13:33 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 5 temp: 300.0 us1: 151.0  us3: 162.0
2015:05:31 22:13:33 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 6 temp: 300.0 us1: 152.0  us3: 162.0
2015:05:31 22:13:33 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 7 temp: 302.0 us1: 151.0  us3: 162.0
2015:05:31 22:13:33 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: preparing 8 replicas for MD run; cycle 2
2015:05:31 22:13:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000128' state changed to PendingInputStaging.
2015:05:31 22:13:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000128' state changed to StagingInput.
2015:05:31 22:13:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000129' state changed to PendingInputStaging.
2015:05:31 22:13:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000130' state changed to PendingInputStaging.
2015:05:31 22:13:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000131' state changed to PendingInputStaging.
2015:05:31 22:13:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000129' state changed to StagingInput.
2015:05:31 22:13:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000130' state changed to StagingInput.
2015:05:31 22:13:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000132' state changed to PendingInputStaging.
2015:05:31 22:13:35 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: submitting 8 replicas for MD run; cycle 2
2015:05:31 22:13:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000131' state changed to StagingInput.
2015:05:31 22:13:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000132' state changed to StagingInput.
2015:05:31 22:13:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000133' state changed to StagingInput.
2015:05:31 22:13:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000134' state changed to StagingInput.
2015:05:31 22:13:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000135' state changed to PendingInputStaging.
2015:05:31 22:13:36 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000135' state changed to StagingInput.
2015:05:31 22:13:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000128' state changed to Executing.
2015:05:31 22:13:38 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000129' state changed to Allocating.
2015:05:31 22:13:39 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000129' state changed to Executing.
2015:05:31 22:13:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000128' state changed to Done.
2015:05:31 22:13:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000129' state changed to Done.
2015:05:31 22:13:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000130' state changed to Executing.
2015:05:31 22:13:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000131' state changed to Allocating.
2015:05:31 22:13:42 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000130' state changed to Done.
2015:05:31 22:13:42 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000131' state changed to Executing.
2015:05:31 22:13:42 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000132' state changed to PendingExecution.
2015:05:31 22:13:43 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000132' state changed to Executing.
2015:05:31 22:13:43 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000133' state changed to PendingExecution.
2015:05:31 22:13:44 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000133' state changed to Allocating.
2015:05:31 22:13:44 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000131' state changed to Done.
2015:05:31 22:13:44 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000133' state changed to Executing.
2015:05:31 22:13:44 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000134' state changed to PendingExecution.
2015:05:31 22:13:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000132' state changed to Done.
2015:05:31 22:13:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000134' state changed to Executing.
2015:05:31 22:13:46 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000135' state changed to PendingExecution.
2015:05:31 22:13:46 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000133' state changed to Done.
2015:05:31 22:13:46 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000135' state changed to Executing.
2015:05:31 22:13:48 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000134' state changed to Done.
2015:05:31 22:13:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000135' state changed to Done.
2015:05:31 22:13:49 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: preparing 8 replicas for Exchange run; cycle 2
2015:05:31 22:13:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000136' state changed to PendingInputStaging.
2015:05:31 22:13:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000136' state changed to StagingInput.
2015:05:31 22:13:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000137' state changed to StagingInput.
2015:05:31 22:13:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000138' state changed to PendingInputStaging.
2015:05:31 22:13:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000138' state changed to StagingInput.
2015:05:31 22:13:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000139' state changed to PendingInputStaging.
2015:05:31 22:13:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000140' state changed to PendingInputStaging.
2015:05:31 22:13:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000141' state changed to PendingInputStaging.
2015:05:31 22:13:50 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: submitting 8 replicas for Exchange run; cycle 2
2015:05:31 22:13:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000139' state changed to StagingInput.
2015:05:31 22:13:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000140' state changed to StagingInput.
2015:05:31 22:13:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000141' state changed to StagingInput.
2015:05:31 22:13:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000142' state changed to StagingInput.
2015:05:31 22:13:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000143' state changed to StagingInput.
2015:05:31 22:13:53 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000136' state changed to StagingOutput.
2015:05:31 22:13:54 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000137' state changed to Allocating.
2015:05:31 22:13:54 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000137' state changed to Executing.
2015:05:31 22:13:55 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000138' state changed to PendingExecution.
2015:05:31 22:13:55 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000137' state changed to StagingOutput.
2015:05:31 22:13:55 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000138' state changed to Allocating.
2015:05:31 22:13:56 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000136' state changed to Done.
2015:05:31 22:13:57 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000138' state changed to StagingOutput.
2015:05:31 22:13:57 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000139' state changed to PendingExecution.
2015:05:31 22:13:57 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000139' state changed to Allocating.
2015:05:31 22:13:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000139' state changed to Executing.
2015:05:31 22:13:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000140' state changed to PendingExecution.
2015:05:31 22:13:58 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000140' state changed to Allocating.
2015:05:31 22:13:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000137' state changed to Done.
2015:05:31 22:13:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000139' state changed to StagingOutput.
2015:05:31 22:13:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000140' state changed to Executing.
2015:05:31 22:13:59 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000141' state changed to Allocating.
2015:05:31 22:14:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000140' state changed to StagingOutput.
2015:05:31 22:14:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000141' state changed to Executing.
2015:05:31 22:14:00 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000142' state changed to Allocating.
2015:05:31 22:14:01 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000138' state changed to Done.
2015:05:31 22:14:01 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000141' state changed to StagingOutput.
2015:05:31 22:14:01 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000142' state changed to Executing.
2015:05:31 22:14:01 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000143' state changed to Allocating.
2015:05:31 22:14:02 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000142' state changed to StagingOutput.
2015:05:31 22:14:02 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000143' state changed to Executing.
2015:05:31 22:14:04 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000139' state changed to Done.
2015:05:31 22:14:04 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000140' state changed to Done.
2015:05:31 22:14:04 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000143' state changed to StagingOutput.
2015:05:31 22:14:06 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000141' state changed to Done.
2015:05:31 22:14:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000142' state changed to Done.
2015:05:31 22:14:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000143' state changed to Done.
2015:05:31 22:14:08 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: performing exchange
2015:05:31 22:14:08 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 0 temp: 302.0 us1: 151.0  us3: 161.0
2015:05:31 22:14:08 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 1 temp: 302.0 us1: 152.0  us3: 161.0
2015:05:31 22:14:08 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 2 temp: 300.0 us1: 151.0  us3: 162.0
2015:05:31 22:14:08 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 3 temp: 300.0 us1: 152.0  us3: 161.0
2015:05:31 22:14:08 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 4 temp: 302.0 us1: 152.0  us3: 162.0
2015:05:31 22:14:08 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 5 temp: 300.0 us1: 151.0  us3: 161.0
2015:05:31 22:14:08 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 6 temp: 300.0 us1: 152.0  us3: 162.0
2015:05:31 22:14:08 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 7 temp: 302.0 us1: 151.0  us3: 162.0
2015:05:31 22:14:08 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Performing cycle: 3
2015:05:31 22:14:08 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: preparing 8 replicas for MD run; cycle 3
2015:05:31 22:14:08 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000144' state changed to PendingInputStaging.
2015:05:31 22:14:09 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000145' state changed to PendingInputStaging.
2015:05:31 22:14:09 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000144' state changed to StagingInput.
2015:05:31 22:14:09 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000145' state changed to StagingInput.
2015:05:31 22:14:09 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000146' state changed to PendingInputStaging.
2015:05:31 22:14:09 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000146' state changed to StagingInput.
2015:05:31 22:14:09 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000147' state changed to StagingInput.
2015:05:31 22:14:09 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000148' state changed to StagingInput.
2015:05:31 22:14:10 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 1: submitting 8 replicas for MD run; cycle 3
2015:05:31 22:14:10 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000149' state changed to StagingInput.
2015:05:31 22:14:10 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000150' state changed to StagingInput.
2015:05:31 22:14:10 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000151' state changed to PendingInputStaging.
2015:05:31 22:14:11 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000151' state changed to StagingInput.
2015:05:31 22:14:11 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000144' state changed to PendingExecution.
2015:05:31 22:14:11 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000144' state changed to Executing.
2015:05:31 22:14:13 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000145' state changed to Allocating.
2015:05:31 22:14:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000144' state changed to Done.
2015:05:31 22:14:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000145' state changed to Executing.
2015:05:31 22:14:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000146' state changed to PendingExecution.
2015:05:31 22:14:14 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000146' state changed to Allocating.
2015:05:31 22:14:15 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000145' state changed to Done.
2015:05:31 22:14:15 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000146' state changed to Executing.
2015:05:31 22:14:16 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000147' state changed to Allocating.
2015:05:31 22:14:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000146' state changed to Done.
2015:05:31 22:14:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000147' state changed to Executing.
2015:05:31 22:14:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000148' state changed to Allocating.
2015:05:31 22:14:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000149' state changed to PendingExecution.
2015:05:31 22:14:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000147' state changed to Done.
2015:05:31 22:14:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000148' state changed to Executing.
2015:05:31 22:14:18 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000149' state changed to Allocating.
2015:05:31 22:14:19 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000150' state changed to PendingExecution.
2015:05:31 22:14:19 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000148' state changed to Done.
2015:05:31 22:14:19 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000149' state changed to Executing.
2015:05:31 22:14:19 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000150' state changed to Allocating.
2015:05:31 22:14:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000149' state changed to Done.
2015:05:31 22:14:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000150' state changed to Done.
2015:05:31 22:14:21 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000151' state changed to Executing.
2015:05:31 22:14:23 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000151' state changed to Done.
2015:05:31 22:14:23 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 0 temp: 302.0 us1: 151.0  us3: 161.0
2015:05:31 22:14:23 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 1 temp: 302.0 us1: 152.0  us3: 161.0
2015:05:31 22:14:23 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 2 temp: 300.0 us1: 151.0  us3: 162.0
2015:05:31 22:14:23 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 3 temp: 300.0 us1: 152.0  us3: 161.0
2015:05:31 22:14:23 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 4 temp: 302.0 us1: 152.0  us3: 162.0
2015:05:31 22:14:23 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 5 temp: 300.0 us1: 151.0  us3: 161.0
2015:05:31 22:14:23 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 6 temp: 300.0 us1: 152.0  us3: 162.0
2015:05:31 22:14:23 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 7 temp: 302.0 us1: 151.0  us3: 162.0
2015:05:31 22:14:23 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: preparing 8 replicas for MD run; cycle 3
2015:05:31 22:14:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000152' state changed to PendingInputStaging.
2015:05:31 22:14:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000152' state changed to StagingInput.
2015:05:31 22:14:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000153' state changed to StagingInput.
2015:05:31 22:14:24 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000154' state changed to PendingInputStaging.
2015:05:31 22:14:25 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000154' state changed to StagingInput.
2015:05:31 22:14:25 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000155' state changed to StagingInput.
2015:05:31 22:14:25 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000156' state changed to StagingInput.
2015:05:31 22:14:25 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 2: submitting 8 replicas for MD run; cycle 3
2015:05:31 22:14:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000157' state changed to StagingInput.
2015:05:31 22:14:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000158' state changed to StagingInput.
2015:05:31 22:14:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000159' state changed to PendingInputStaging.
2015:05:31 22:14:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000159' state changed to StagingInput.
2015:05:31 22:14:26 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000152' state changed to Allocating.
2015:05:31 22:14:27 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000152' state changed to Executing.
2015:05:31 22:14:28 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000153' state changed to PendingExecution.
2015:05:31 22:14:28 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000152' state changed to StagingOutput.
2015:05:31 22:14:28 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000153' state changed to Allocating.
2015:05:31 22:14:29 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000152' state changed to Done.
2015:05:31 22:14:29 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000153' state changed to Executing.
2015:05:31 22:14:29 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000154' state changed to PendingExecution.
2015:05:31 22:14:30 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000154' state changed to Allocating.
2015:05:31 22:14:31 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000153' state changed to Done.
2015:05:31 22:14:31 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000154' state changed to Executing.
2015:05:31 22:14:31 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000155' state changed to Allocating.
2015:05:31 22:14:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000156' state changed to PendingExecution.
2015:05:31 22:14:32 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000156' state changed to Allocating.
2015:05:31 22:14:33 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000154' state changed to Done.
2015:05:31 22:14:33 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000155' state changed to Executing.
2015:05:31 22:14:33 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000156' state changed to Executing.
2015:05:31 22:14:33 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000157' state changed to PendingExecution.
2015:05:31 22:14:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000155' state changed to Done.
2015:05:31 22:14:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000157' state changed to Allocating.
2015:05:31 22:14:34 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000158' state changed to PendingExecution.
2015:05:31 22:14:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000156' state changed to Done.
2015:05:31 22:14:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000157' state changed to Executing.
2015:05:31 22:14:35 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000158' state changed to Allocating.
2015:05:31 22:14:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000157' state changed to Done.
2015:05:31 22:14:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000158' state changed to Done.
2015:05:31 22:14:37 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000159' state changed to Executing.
2015:05:31 22:14:39 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000159' state changed to Done.
2015:05:31 22:14:39 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 0 temp: 302.0 us1: 151.0  us3: 161.0
2015:05:31 22:14:39 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 1 temp: 302.0 us1: 152.0  us3: 161.0
2015:05:31 22:14:39 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 2 temp: 300.0 us1: 151.0  us3: 162.0
2015:05:31 22:14:39 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 3 temp: 300.0 us1: 152.0  us3: 161.0
2015:05:31 22:14:39 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 4 temp: 302.0 us1: 152.0  us3: 162.0
2015:05:31 22:14:39 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 5 temp: 300.0 us1: 151.0  us3: 161.0
2015:05:31 22:14:39 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 6 temp: 300.0 us1: 152.0  us3: 162.0
2015:05:31 22:14:39 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] rid: 7 temp: 302.0 us1: 151.0  us3: 162.0
2015:05:31 22:14:39 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: preparing 8 replicas for MD run; cycle 3
2015:05:31 22:14:40 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000160' state changed to StagingInput.
2015:05:31 22:14:40 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000161' state changed to StagingInput.
2015:05:31 22:14:40 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000162' state changed to StagingInput.
2015:05:31 22:14:40 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000163' state changed to PendingInputStaging.
2015:05:31 22:14:40 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000164' state changed to PendingInputStaging.
2015:05:31 22:14:41 9505   MainThread   radical.repex.pk-patternB-multiD: [INFO    ] Dim 3: submitting 8 replicas for MD run; cycle 3
2015:05:31 22:14:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000166' state changed to PendingInputStaging.
2015:05:31 22:14:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000163' state changed to StagingInput.
2015:05:31 22:14:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000164' state changed to StagingInput.
2015:05:31 22:14:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000165' state changed to StagingInput.
2015:05:31 22:14:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000166' state changed to StagingInput.
2015:05:31 22:14:41 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000167' state changed to StagingInput.
2015:05:31 22:14:42 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000160' state changed to Allocating.
2015:05:31 22:14:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000160' state changed to Done.
2015:05:31 22:14:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000161' state changed to Executing.
2015:05:31 22:14:45 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000162' state changed to Allocating.
2015:05:31 22:14:46 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000161' state changed to StagingOutput.
2015:05:31 22:14:46 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000162' state changed to Executing.
2015:05:31 22:14:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000161' state changed to Done.
2015:05:31 22:14:47 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000163' state changed to Allocating.
2015:05:31 22:14:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000162' state changed to Done.
2015:05:31 22:14:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000163' state changed to Done.
2015:05:31 22:14:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000164' state changed to Executing.
2015:05:31 22:14:49 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000165' state changed to Allocating.
2015:05:31 22:14:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000166' state changed to PendingExecution.
2015:05:31 22:14:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000164' state changed to Done.
2015:05:31 22:14:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000165' state changed to Executing.
2015:05:31 22:14:50 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000166' state changed to Allocating.
2015:05:31 22:14:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000167' state changed to PendingExecution.
2015:05:31 22:14:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000165' state changed to Done.
2015:05:31 22:14:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000166' state changed to Executing.
2015:05:31 22:14:51 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000167' state changed to Allocating.
2015:05:31 22:14:53 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000166' state changed to Done.
2015:05:31 22:14:54 9505   Thread-5     radical.repex.pk-patternB-multiD: [INFO    ] ComputeUnit 'unit.000167' state changed to Done.
2015:05:31 22:14:54 9505   MainThread   radical.repex.launcher-3d-TUU: [INFO    ] Simulation successfully finished!
2015:05:31 22:14:54 9505   MainThread   radical.repex.launcher-3d-TUU: [INFO    ] Please check output files in replica_x directories.
2015:05:31 22:14:54 9505   MainThread   radical.repex.launcher-3d-TUU: [INFO    ] Closing session.
2015:05:31 22:15:02 9505   Thread-1     radical.repex.pk-patternB-multiD: [INFO    ] ComputePilot 'pilot.0000' state changed to Canceled.

sure exchanges don't happen for every cycle, but I have done some random checks and exchanged in US dimensions are happening. Am I missing something?

antonst commented 9 years ago

For example for replica with id 2 the following exchanges take place:

rid: 2 temp: 302.0 us1: 151.0  us3: 161.0
rid: 2 temp: 302.0 us1: 152.0  us3: 161.0
rid: 2 temp: 300.0 us1: 152.0  us3: 161.0
rid: 2 temp: 300.0 us1: 152.0  us3: 162.0
rid: 2 temp: 300.0 us1: 151.0  us3: 162.0
rid: 2 temp: 302.0 us1: 151.0  us3: 162.0
rid: 2 temp: 302.0 us1: 151.0  us3: 161.0
rid: 2 temp: 302.0 us1: 151.0  us3: 161.0
rid: 2 temp: 300.0 us1: 151.0  us3: 161.0
rid: 2 temp: 300.0 us1: 151.0  us3: 162.0
rid: 2 temp: 300.0 us1: 151.0  us3: 162.0
rid: 2 temp: 300.0 us1: 151.0  us3: 162.0

May I ask how do you check for exchanges?

haoyuanchen commented 9 years ago

The way I check exchanges was looking at the input files in the replica folders which got transferred back to local computer. I should check the log files as you did. There's chance that in that simulation I was super unlucky so all the exchange attempts failed...I'll check again and see how it goes.

Thanks!

antonst commented 9 years ago

Thanks for the reply. I will commit changes now, so that replica parameters can be displayed.

haoyuanchen commented 9 years ago

I ran it again and checked the log file, it said that the exchanges did happen. However, in the input files in the individual replica running folders, it seems that the us parameters actually didn't change. If you do

grep DISANG unit*/*.mdin

in the sandbox in the remote computing cluster you should be able to see it. Since the exchange "happened" in the log file, my guess here is that the exchanges were actually performed correctly, but the updated parameters were not passed into the next cycle properly.

Thanks!