pip install fails

[shantenujha]

https://gist.github.com/shantenujha/1a87d2a0be248c2632c6

[antonst]

Can you please do:

export SDKROOT=
pip install radical.repex

[antonst]

did it work?

[shantenujha]

trying now.

[shantenujha]

no

[shantenujha]

https://gist.github.com/shantenujha/73c514ba7a992044cfe1

[shantenujha]

Should the value of SDKROOT value really be set to null ?

[antonst]

Please try this:

http://mpi4py.readthedocs.org/en/latest/appendix.html#mac-os-x-and-universal-sdk-python-builds

[antonst]

If you can install mpi4py on your laptop, e.g.:

pip install mpi4py

you should be OK. If this happens to be troublesome, in principle for this tutorial MPI support is not strictly required.

[shantenujha]

Hmm. I can try to fix this, but I fear that most students will not. Should I try on workflows.iu.xsede.org which is where most students will start?

[antonst]

Should I try on workflows.iu.xsede.org which is where most students will start?

please do. Again, if it is difficult to install mpi4py on mac then I can remove that dependency.

[shantenujha]

Alas, mpi4py failed both on workflows.iu.xsede.org and my laptop.

I am not sure I understood, what you wanted me to do from: http://mpi4py.readthedocs.org/en/latest/appendix.html#mac-os-x-and-universal-sdk-python-builds

[shantenujha]

output of failed pip install mpi4py

at

https://gist.github.com/shantenujha/c6b736dec9f6cfaf4f87

[shantenujha]

BTW, wil you make the documentation page at: http://repex.readthedocs.org/en/devel-antons/pages/installation.html consistent/similar to https://docs.google.com/spreadsheets/d/1sVMLiSoSbgE9vjLaQPxkEXDuoEjirudrT7JjKh6uI24/edit#gid=802012857

[shantenujha]

worth mentioning that the instructions given at: http://repex.readthedocs.org/en/devel-antons/pages/installation.html

worked nicely.

i was able to install repex

(repex-env)[jha@workflow radical.repex]$ repex-version 0.2.1

[shantenujha]

.. on both workflow.iu.xsede.org and on my laptop (RandomDisorder)!!

[antonst]

Andre just mentioned that setup.py does not work with RP :-)

On Sat, Oct 17, 2015 at 11:33 PM, Shantenu notifications@github.com wrote:

worth mentioning that the instructions given at: http://repex.readthedocs.org/en/devel-antons/pages/installation.html

worked nicely.

i was able to install repex

(repex-env)[jha@workflow radical.repex]$ repex-version 0.2.1

— Reply to this email directly or view it on GitHub https://github.com/radical-cybertools/radical.repex/issues/47#issuecomment-148974790 .

[shantenujha]

what does he know about RP? :)

[shantenujha]

i wasn't able to get further though (ie got stuck with repex-amber at: http://repex.readthedocs.org/en/devel-antons/pages/gettingstarted.html )

(repex-env)RandomDisorder:radical.repex shantenu$ repex-amber --input='tsu_remd_ace_ala_nme.json' --rconfig='stampede.json' Traceback (most recent call last): File "/Users/shantenu/repex-env/bin/repex-amber", line 5, in pkg_resources.run_script('radical.repex==0.2.1', 'repex-amber') File "/Users/shantenu/repex-env/lib/python2.7/site-packages/pkg_resources.py", line 488, in run_script self.require(requires)[0].run_script(script_name, ns) File "/Users/shantenu/repex-env/lib/python2.7/site-packages/pkg_resources.py", line 1338, in run_script execfile(script_filename, namespace, namespace) File "/Users/shantenu/repex-env/lib/python2.7/site-packages/radical.repex-0.2.1-py2.7.egg/EGG-INFO/scripts/repex-amber", line 13, in from amber_kernels_tex.kernel_pattern_s_tex import KernelPatternStex File "/Users/shantenu/repex-env/lib/python2.7/site-packages/radical.repex-0.2.1-py2.7.egg/amber_kernels_tex/kernel_pattern_s_tex.py", line 23, in import amber_kernels_tex.global_ex_calculator_mpi ImportError: No module named global_ex_calculator_mpi

But i'll pause for now and resume after a few hours of sleep.

[antonst]

I know...

[antonst]

Can you please try now, with pip

[antonst]

should work now with: 0.2.2 repex version