radiome-lab / radiome

Configurable Pipeline for the Analysis of Medical Imaging Data
BSD 3-Clause "New" or "Revised" License
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Update sphinx to 2.4.1 #48

Closed pyup-bot closed 4 years ago

pyup-bot commented 4 years ago

This PR updates Sphinx from 2.3.1 to 2.4.1.

Changelog ### 2.4.1 ``` ===================================== Bugs fixed ---------- * 7120: html: crashed when on scaling SVG images which have float dimentions * 7126: autodoc: TypeError: 'getset_descriptor' object is not iterable ``` ### 2.4.0 ``` ===================================== Deprecated ---------- * The ``decode`` argument of ``sphinx.pycode.ModuleAnalyzer()`` * ``sphinx.directives.other.Index`` * ``sphinx.environment.temp_data['gloss_entries']`` * ``sphinx.environment.BuildEnvironment.indexentries`` * ``sphinx.environment.collectors.indexentries.IndexEntriesCollector`` * ``sphinx.ext.apidoc.INITPY`` * ``sphinx.ext.apidoc.shall_skip()`` * ``sphinx.io.FiletypeNotFoundError`` * ``sphinx.io.get_filetype()`` * ``sphinx.pycode.ModuleAnalyzer.encoding`` * ``sphinx.roles.Index`` * ``sphinx.util.detect_encoding()`` * ``sphinx.util.get_module_source()`` * ``sphinx.util.inspect.Signature`` * ``sphinx.util.inspect.safe_getmembers()`` * ``sphinx.writers.latex.LaTeXTranslator.settings.author`` * ``sphinx.writers.latex.LaTeXTranslator.settings.contentsname`` * ``sphinx.writers.latex.LaTeXTranslator.settings.docclass`` * ``sphinx.writers.latex.LaTeXTranslator.settings.docname`` * ``sphinx.writers.latex.LaTeXTranslator.settings.title`` * ``sphinx.writers.latex.ADDITIONAL_SETTINGS`` * ``sphinx.writers.latex.DEFAULT_SETTINGS`` * ``sphinx.writers.latex.LUALATEX_DEFAULT_FONTPKG`` * ``sphinx.writers.latex.PDFLATEX_DEFAULT_FONTPKG`` * ``sphinx.writers.latex.XELATEX_DEFAULT_FONTPKG`` * ``sphinx.writers.latex.XELATEX_GREEK_DEFAULT_FONTPKG`` Features added -------------- * 6910: inheritance_diagram: Make the background of diagrams transparent * 6446: duration: Add ``sphinx.ext.durations`` to inspect which documents slow down the build * 6837: LaTeX: Support a nested table * 7115: LaTeX: Allow to override LATEXOPTS and LATEXMKOPTS via environment variable * 6966: graphviz: Support ``:class:`` option * 6696: html: ``:scale:`` option of image/figure directive not working for SVG images (imagesize-1.2.0 or above is required) * 6994: imgconverter: Support illustrator file (.ai) to .png conversion * autodoc: Support Positional-Only Argument separator (PEP-570 compliant) * autodoc: Support type annotations for variables * 2755: autodoc: Add new event: :event:`autodoc-before-process-signature` * 2755: autodoc: Support type_comment style (ex. `` type: (str) -> str``) annotation (python3.8+ or `typed_ast <https://github.com/python/typed_ast>`_ is required) * 7051: autodoc: Support instance variables without defaults (PEP-526) * 6418: autodoc: Add a new extension ``sphinx.ext.autodoc.typehints``. It shows typehints as object description if ``autodoc_typehints = "description"`` set. This is an experimental extension and it will be integrated into autodoc core in Sphinx-3.0 * SphinxTranslator now calls visitor/departure method for super node class if visitor/departure method for original node class not found * 6418: Add new event: :event:`object-description-transform` * py domain: :rst:dir:`py:data` and :rst:dir:`py:attribute` take new options named ``:type:`` and ``:value:`` to describe its type and initial value * 6785: py domain: ``:py:attr:`` is able to refer properties again * 6772: apidoc: Add ``-q`` option for quiet mode Bugs fixed ---------- * 6925: html: Remove redundant type="text/javascript" from <script> elements * 7112: html: SVG image is not layouted as float even if aligned * 6906, 6907: autodoc: failed to read the source codes encoeded in cp1251 * 6961: latex: warning for babel shown twice * 7059: latex: LaTeX compilation falls into infinite loop (wrapfig issue) * 6581: latex: ``:reversed:`` option for toctree does not effect to LaTeX build * 6559: Wrong node-ids are generated in glossary directive * 6986: apidoc: misdetects module name for .so file inside module * 6899: apidoc: private members are not shown even if ``--private`` given * 6327: apidoc: Support a python package consisted of __init__.so file * 6999: napoleon: fails to parse tilde in :exc: role * 7019: gettext: Absolute path used in message catalogs * 7023: autodoc: nested partial functions are not listed * 7023: autodoc: partial functions imported from other modules are listed as module members without :impoprted-members: option * 6889: autodoc: Trailing comma in ``:members::`` option causes cryptic warning * 6568: autosummary: ``autosummary_imported_members`` is ignored on generating a stub file for submodule * 7055: linkcheck: redirect is treated as an error * 7088: HTML template: If ``navigation_with_keys`` option is activated, modifier keys are ignored, which means the feature can interfere with browser features * 7090: std domain: Can't assign numfig-numbers for custom container nodes * 7106: std domain: enumerated nodes are marked as duplicated when extensions call ``note_explicit_target()`` * 7095: dirhtml: Cross references are broken via intersphinx and ``:doc:`` role * C++: - Don't crash when using the ``struct`` role in some cases. - Don't warn when using the ``var``/``member`` role for function parameters. - Render call and braced-init expressions correctly. * 7097: Filenames of images generated by ``sphinx.transforms.post_transforms.images.ImageConverter`` or its subclasses (used for latex build) are now sanitized, to prevent broken paths ```
Links - PyPI: https://pypi.org/project/sphinx - Changelog: https://pyup.io/changelogs/sphinx/ - Homepage: http://sphinx-doc.org/
codecov[bot] commented 4 years ago

Codecov Report

Merging #48 into master will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master      #48   +/-   ##
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  Coverage   76.71%   76.71%           
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  Files           4        4           
  Lines          73       73           
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  Hits           56       56           
  Misses         17       17

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pyup-bot commented 4 years ago

Closing this in favor of #51