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radxtools / collageradiomics

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.
BSD 3-Clause "New" or "Revised" License
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x-Dimension of haralick features is not aligned with mask width #121

Open akanksha28pathak opened 1 year ago

akanksha28pathak commented 1 year ago

The error is not consistent across data and occurs only in some cases. The error is basically that x-dimension of haralick features does not matches the mask width. The line at which error occurs is as follows:

Code line in function ‘execute’ of collageradiomics.py collage_output[mask_min_y:mask_max_y, mask_min_x:mask_max_x, mask_min_z:mask_max_z,:, :] = haralick_features

Image_Mask-files.zip

Example error: ValueError: could not broadcast input array from shape (230,455,1,13,1) into shape (230,460,1,13,1)

I have attached the image file and mask for the corresponding error.

mohsenhariri commented 1 year ago

Could you confirm if your mask is correct?

image

akanksha28pathak commented 1 year ago

Image_mask_plot Yes the mask is correct. It is just the boundary of the foreground.