Add a command line interface for collageradiomics. #86 #87

radxtools / collageradiomics

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

BSD 3-Clause "New" or "Revised" License

15 stars 11 forks source link

Add a command line interface for collageradiomics. #86 #87 #88

Closed nathanhillyer closed 4 years ago

nathanhillyer commented 4 years ago

Adds a command line interface version of collageradiomics. This is a wrapper around our core module with support for statistic output of the entire masked region via a CSV file.

Available on Pypi: pip install collageradiomicscli

Thank you @sarthakpati!

nathanhillyer commented 4 years ago

@sarthakpati looks like there's some leftover files in the root of the repo in this branch. Could you please delete those?

sarthakpati commented 4 years ago

Looks good, now?

nathanhillyer commented 4 years ago

Yup!

sarthakpati commented 4 years ago

This is now integrated in CaPTk (the corner case that results in #89 has been disabled, for now): https://github.com/CBICA/CaPTk/pull/1326