rafelafrance / nitfix

Phylogenomic discovery and engineering of nitrogen fixation into the bioenergy woody crop poplar
MIT License
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New table for nodulation information #7

Closed robgur closed 4 years ago

robgur commented 6 years ago

Rafe, we need to set up a new table capturing nodulation characters reported for a taxon. There is going to be a separate table for other traits that Ryan is busy collecting. Here is the nodulation-specific table, below.

Root Nodules: Present, Absent, False Nodules/Nodule-like Swellings • Stem Nodules: Present, Absent • Canopy Nodules: Present, Absent • Entry: Root Hair, Crack, Intercellular • Vasculature: Central, Peripheral • Meristem: Determinate, Indeterminate • Nodule Morphology: Astragaloid/Caesalpinioid, Aeschynomenoid/Dalbergioid, Crotalarioid, Lupinoid/Collar, Indigoferoid, Mucunoid, Desmodioid • Cell Layer Origin: Inner Cortex, Pericycle, Both • Prenodule: Present, Absent • Extent of Infection: Complete, Unilateral • Bacteroid Morphology: Type E, Type S, Type U, Fixation Thread, Typical Vesicle, Atypical Vesicle • Antimicrobial Peptides: Present, Absent • Leghemoglobin: Present, Absent • Lenticels: Present, Absent • Nitrogen Transported: Amides, Ureides • Transfer Cells: Present, Absent • Vacuolation of Infected Cells: Vacuolate, Not Vacuolate • Endoreduplication: Present, Absent • Symbiont Genus"

We also need to consider the following: Citation (probably make this a citation_id and point to a separate table to store citations since we have other traits coming besides nodulation) Taxon_name (or however you are storing that for a foreign key) Nodulation_report_id