Is your feature request related to a problem? Please describe.
As we are having all kinds of fun issues with both ANTs (C++) and PyANTsX (Python), it would make sense to try another atlas registration package. Freesurfer is the likely best candidate.
Describe the solution you'd like
Using freesurfer should not change the user experience at all. It should yield similar (or better) registration results, and runtime should not be greatly affected.
Is your feature request related to a problem? Please describe. As we are having all kinds of fun issues with both ANTs (C++) and PyANTsX (Python), it would make sense to try another atlas registration package. Freesurfer is the likely best candidate.
Describe the solution you'd like Using freesurfer should not change the user experience at all. It should yield similar (or better) registration results, and runtime should not be greatly affected.