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raidionics / Raidionics

Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes
https://raidionics.github.io/
BSD 2-Clause "Simplified" License
31 stars 4 forks source link

GUI-Tumor sub-compartments #59

Closed gusSCIMOV closed 10 months ago

gusSCIMOV commented 10 months ago

Amazing tool: Just a question: I[m using four MRI modalities for GBM cases. Can you help me out to figure out how I can set up the model to get tumor sub-compartments (necrotic core, enhancing tumor and edema)?

Thanks Gustavo

andreped commented 10 months ago

Hello, @gusSCIMOV! We have yet to add support for such a model, but we recently participated in BraTS, so we might add such a model in the near future.

Shall we integrate the model we made for BraTS, @dbouget?

dbouget commented 10 months ago

I will look into adding support for the BraTS models providing sub-compartments segmentation.

andreped commented 10 months ago

I think @dbouget added support for a model trained on BraTS in 65cad4b18272db62ac475812c0361bea83ee8a53.

A release including this model will be made available shortly, @gusSCIMOV!

dbouget commented 10 months ago

Hi @gusSCIMOV, A new release is available, with the option to perform multiclass segmentation and retrieve the tumor sub-compartments.

For now, only our in-house trained models over the BraTS datasets are available, so you should expect worse performances than with the best BraTS models, or than with our single-class models. I will look into the possibility to make available other BraTS models in the future.

For enabling the multiclass segmentation, you simply need to modify the Output classes option in Settings > Preferences > Processing - Segmentation > Segmentation models.