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raivokolde / pheatmap

Pretty heatmaps
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input file for pheatmap #80

Open bioinfonext opened 3 years ago

bioinfonext commented 3 years ago

hello,

Can we use DESeq2 normalise count as input for pheatmap?

x<-counts(dds6Genus,normalized=TRUE)

heatmap(x,scale="row",color =colorRampPalette(c('blue','yellow'))(12),cluster_cols =F,show_colnames = T,cluster_row=T,border_color="NA", fontsize_row=10,fontsize =10)

Many thanks

keenhl commented 2 years ago

This should work, but it will be a lot better to use some kind of log transformed values instead.