Open atly2000 opened 1 year ago
I would like to plot a pheatmap for a dataframe with values ranging from -9.96 to 15. I want to center the white portion at the value of 10.
I was able to center the white portion, but the "midnightblue" range is very small. I expected more colors between -9.96 to 5.
How can I adjust my breaks?
colors <- c(seq(minval, midblueval,by=0.01),seq(mid1,mid2,by=0.01),seq(max1,max2,by=0.01)) minval = log2(0.001) #-9.96 midblueval = (5+minval)/2 #-2.5 mid1= 8 mid2= 12 max1 =13 max2=15 len1=(midblueval-minval)/0.01 len2=(mid2-mid1)/0.01 len3=(max2-max1)/0.01 my_palette <- c(colorRampPalette(colors = c("midnightblue","blue"))(len1), colorRampPalette(colors = c("blue", "white", "red"))(len2), colorRampPalette(colors = c("red","red4"))(len3) )
I would like to plot a pheatmap for a dataframe with values ranging from -9.96 to 15. I want to center the white portion at the value of 10.
I was able to center the white portion, but the "midnightblue" range is very small. I expected more colors between -9.96 to 5.
How can I adjust my breaks?