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rajanil / fastStructure

A variational framework for inferring population structure from SNP genotype data.
MIT License
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error in distruct.py #64

Open sekhwal opened 3 years ago

sekhwal commented 3 years ago

When I try following command, I am getting following error: Please advise to figure-out.

distruct.py -K 6 --input=/scratch/segi-plink-faststructure/segi-faststructure-out --output=/scratch/segi-plink-faststructure/segioutput_faststructure_distruct.svg

ERROR:

file with population labels is not provided or does not exist .... creating population labels based on inferred admixture proportions Traceback (most recent call last): File "/home/.conda/envs/my_tools_1/bin/distruct.py", line 166, in figure = plot_admixture(admixture, population_indices, population_labels, title) File "/home/.conda/envs/my_tools_1/bin/distruct.py", line 17, in plot_admixture figure = plot.figure(figsize=(5,3)) File "/home/.conda/envs/my_tools_1/lib/python2.7/site-packages/matplotlib/pyplot.py", line 533, in figure **kwargs) File "/home/.conda/envs/my_tools_1/lib/python2.7/site-packages/matplotlib/backend_bases.py", line 161, in new_figure_manager return cls.new_figure_manager_given_figure(num, fig) File "/home/.conda/envs/my_tools_1/lib/python2.7/site-packages/matplotlib/backends/_backend_tk.py", line 1046, in new_figure_manager_given_figur e window = Tk.Tk(className="matplotlib") File "/home/.conda/envs/my_tools_1/lib/python2.7/lib-tk/Tkinter.py", line 1819, in init self.tk = _tkinter.create(screenName, baseName, className, interactive, wantobjects, useTk, sync, use) _tkinter.TclError: no display name and no $DISPLAY environment variable

jikhashkya commented 2 years ago

I'm getting a similar error. It looks like this hasn't been resolved. @rajanil