Open lucygarner opened 4 years ago
Hi,
From running plot_accessibility_profile.py for the TF Rorgt, I am getting the following plot:
I have ATAC-seq data (three replicate BAM files) and the Rorgt motif sites were identified using scanMotifGenomeWide.pl from HOMER.
Could someone help me with interpreting this please? I can't see the grey line which is supposed to represent the profile at unbound sites?
This is the footprint I got for CTCF, but I still don't see the line for unbound motifs:
Many thanks, Lucy
Hi,
From running plot_accessibility_profile.py for the TF Rorgt, I am getting the following plot:![image](https://user-images.githubusercontent.com/22564745/71325357-8ffb2b00-24e3-11ea-867c-59ba0b51515f.png)
I have ATAC-seq data (three replicate BAM files) and the Rorgt motif sites were identified using scanMotifGenomeWide.pl from HOMER.
Could someone help me with interpreting this please? I can't see the grey line which is supposed to represent the profile at unbound sites?
This is the footprint I got for CTCF, but I still don't see the line for unbound motifs:![image](https://user-images.githubusercontent.com/22564745/71325552-495b0000-24e6-11ea-934c-65ab01e34da0.png)
Many thanks, Lucy