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rajeshrinet / pyross

PyRoss: inference, forecasts, and optimised control of epidemiological models in Python. github.com/rajeshrinet/pyross
https://pyross.readthedocs.io
MIT License
169 stars 57 forks source link

Unable to find vcvarsall.bat #31

Closed tomyduby closed 4 years ago

tomyduby commented 4 years ago

I am trying to install PyRoss using Anaconda3 power shell. This is the error message I am getting:

(base) PS C:\Users\Tomy> cd \ramp\code\pyross
(base) PS C:\ramp\code\pyross> python setup.py install
running install
running build
running build_py
running build_ext
building 'pyross.contactMatrix' extension
error: Unable to find vcvarsall.bat
(base) PS C:\ramp\code\pyross>

Please advise Thanks Tomy

rajeshrinet commented 4 years ago

@tomyduby there is a solution in #14

Please can you have a look at that issue and try the solution.

Thanks

tomyduby commented 4 years ago

Dear @rajeshrinet , Thanks for your prompt reply. I installed visualcppbuildtools_full.exe.

But there is a new issue:

(base) PS C:\Users\Tomy> cd \ramp\code\pyross
(base) PS C:\ramp\code\pyross> python setup.py install
running install
running build
running build_py
running build_ext
building 'pyross.contactMatrix' extension
creating build\temp.win-amd64-3.7
creating build\temp.win-amd64-3.7\Release
creating build\temp.win-amd64-3.7\Release\pyross
C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\BIN\x86_amd64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -IC:\Python\anaconda3\lib\site-packages\numpy\core\include -IC:\Python\anaconda3\include -IC:\Python\anaconda3\include "-IC:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\INCLUDE" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.10240.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\8.1\include\shared" "-IC:\Program Files (x86)\Windows Kits\8.1\include\um" "-IC:\Program Files (x86)\Windows Kits\8.1\include\winrt" /Tcpyross\contactMatrix.c /Fobuild\temp.win-amd64-3.7\Release\pyross\contactMatrix.obj
contactMatrix.c
c:\python\anaconda3\lib\site-packages\numpy\core\include\numpy\npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\BIN\x86_amd64\link.exe /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\Python\anaconda3\libs /LIBPATH:C:\Python\anaconda3\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\LIB\amd64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.10240.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\8.1\lib\winv6.3\um\x64" /EXPORT:PyInit_contactMatrix build\temp.win-amd64-3.7\Release\pyross\contactMatrix.obj /OUT:build\lib.win-amd64-3.7\pyross\contactMatrix.cp37-win_amd64.pyd /IMPLIB:build\temp.win-amd64-3.7\Release\pyross\contactMatrix.cp37-win_amd64.lib
contactMatrix.obj : warning LNK4197: export 'PyInit_contactMatrix' specified multiple times; using first specification
   Creating library build\temp.win-amd64-3.7\Release\pyross\contactMatrix.cp37-win_amd64.lib and object build\temp.win-amd64-3.7\Release\pyross\contactMatrix.cp37-win_amd64.exp
Generating code
c:\ramp\code\pyross\pyross\contactmatrix.c(55639) : fatal error C1002: compiler is out of heap space in pass 2
LINK : fatal error LNK1257: code generation failed
error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14.0\\VC\\BIN\\x86_amd64\\link.exe' failed with exit status 1257
(base) PS C:\ramp\code\pyross>

Do you have any ideas / workarounds? Many thanks for your help Tomy

rajeshrinet commented 4 years ago

Dear @tomyduby

This link has a workaround. Please can you try this and let me know if this works?

Thanks

tomyduby commented 4 years ago

Dear @rajeshrinet I faithfully followed your instructions but so far with little success. I managed to create ta-lib (that was done in a separate window that I do not include). Then I opened anaconda3 powershell and here is the screen dump:


(base) PS C:\ramp\code\pyross> pip install ta-lib
Collecting ta-lib
  Downloading TA-Lib-0.4.18.tar.gz (265 kB)
     |████████████████████████████████| 265 kB 2.2 MB/s
Requirement already satisfied: numpy in c:\python\anaconda3\lib\site-packages (from ta-lib) (1.18.1)
Building wheels for collected packages: ta-lib
  Building wheel for ta-lib (setup.py) ... done
  Created wheel for ta-lib: filename=TA_Lib-0.4.18-cp37-cp37m-win_amd64.whl size=543376 sha256=9a675c2dfe1e51540d326a8d559fa7791a6388a909c00f9e1844fa992a385f69
  Stored in directory: c:\users\tomy\appdata\local\pip\cache\wheels\e0\f4\97\46b06b3ebf454662460c56478bf7412d4adfb40590ed98ba39
Successfully built ta-lib
Installing collected packages: ta-lib
Successfully installed ta-lib-0.4.18
(base) PS C:\ramp\code\pyross> python setup.py install
running install
running build
running build_py
running build_ext
building 'pyross.contactMatrix' extension
C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\BIN\x86_amd64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -IC:\Python\anaconda3\lib\site-packages\numpy\core\include -IC:\Python\anaconda3\include -IC:\Python\anaconda3\include "-IC:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\INCLUDE" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.10240.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\8.1\include\shared" "-IC:\Program Files (x86)\Windows Kits\8.1\include\um" "-IC:\Program Files (x86)\Windows Kits\8.1\include\winrt" /Tcpyross\contactMatrix.c /Fobuild\temp.win-amd64-3.7\Release\pyross\contactMatrix.obj
contactMatrix.c
c:\python\anaconda3\lib\site-packages\numpy\core\include\numpy\npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\BIN\x86_amd64\link.exe /nologo /INCREMENTAL:NO /LTCG /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\Python\anaconda3\libs /LIBPATH:C:\Python\anaconda3\PCbuild\amd64 "/LIBPATH:C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\LIB\amd64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.10240.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\8.1\lib\winv6.3\um\x64" /EXPORT:PyInit_contactMatrix build\temp.win-amd64-3.7\Release\pyross\contactMatrix.obj /OUT:build\lib.win-amd64-3.7\pyross\contactMatrix.cp37-win_amd64.pyd /IMPLIB:build\temp.win-amd64-3.7\Release\pyross\contactMatrix.cp37-win_amd64.lib
contactMatrix.obj : warning LNK4197: export 'PyInit_contactMatrix' specified multiple times; using first specification
   Creating library build\temp.win-amd64-3.7\Release\pyross\contactMatrix.cp37-win_amd64.lib and object build\temp.win-amd64-3.7\Release\pyross\contactMatrix.cp37-win_amd64.exp
Generating code
c:\ramp\code\pyross\pyross\contactmatrix.c(55639) : fatal error C1002: compiler is out of heap space in pass 2
LINK : fatal error LNK1257: code generation failed
error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14.0\\VC\\BIN\\x86_amd64\\link.exe' failed with exit status 1257
(base) PS C:\ramp\code\pyross>
```.
Sorry for causing so much trouble :-).
Tomy
rajeshrinet commented 4 years ago

Dear @tomyduby

It seems to be a problem of the older version of Visual Studio. Please see this link.

Would you please try installing 16.4 or later. From you error messages, I can see that you are using Visual Studio 14.0.

Thanks:)

tomyduby commented 4 years ago

Dear @rajeshrinet ,

This is what I did this afternoon:

The above link: 
https://developercommunity.visualstudio.com/content/problem/653301/fatal-error-c1002-compiler-is-out-of-heap-space-in.html.
A fix for this issue has been released! Install the most recent release from 
https://visualstudio.microsoft.com/downloads/. 
Thank you for providing valuable feedback which has helped improve the product.

In Settings / Apps and Features I see that I have installed on 23-May-20
Microsoft Visual C-- 2015 Redistributable (x64) ... uninstalled.
Microsoft Visual C-- 2015 Redistributable (x85) ... uninstalled.
Microsoft Visual C++ Build tools ... uninstalled.

Downloading new version from:
https://visualstudio.microsoft.com/thank-you-downloading-visual-studio/?sku=BuildTools&rel=16
Downloaded vs_buildtools__149782774.1590417972.exe to Downloads.

Running vs_buildtools__149782774.1590417972.exe from downloads.
15:56: started.
15:58: done. This downloaded and installed Visual Studio Installer.

16:21: Started Visual Studio Installer
       Installed Visual Studio Community 2019.
16:26: Started installation        
16:36: Done. But not signed in to my developer services. May be later.
16:37: Preparing for first use. Continue with no code.

16:38: Start Anaconda3 Powershell
  cd \ramp\code\pyross
  python setup.py install

(base) PS C:\Users\Tomy> cd \ramp
(base) PS C:\ramp> cd code
(base) PS C:\ramp\code> cd pyross
(base) PS C:\ramp\code\pyross> python setup.py install
running install
running build
running build_py
running build_ext
building 'pyross.contactMatrix' extension
error: Unable to find vcvarsall.bat
(base) PS C:\ramp\code\pyross>
 I have already taken too much of your time. May be one more go to fix this problem?
 Best wishes
 Tomy
TakodaS commented 4 years ago

Windows is unfortunately not supported. The differences between the windows and linux/mac operating systems makes cross compatibility very difficult. I suggest that you install pyross using either a linux virtual machine under windows or the windows linux subsystem.

tomyduby commented 4 years ago

Thanks! I understand. Best wishes Tomy