rajewsky-lab / mirdeep2

Discovering known and novel miRNAs from small RNA sequencing data

GNU General Public License v3.0

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Closed DylanDSouzaInd closed 2 years ago

DylanDSouzaInd commented 2 years ago

Starting miRDeep2

/home/rajesh/mirdeep2/bin/miRDeep2.pl merged.fa ../../03_db/chrygca710275/penref.fasta rnareads_vs_genome.arf none none none

miRDeep2 started at 14:3:22

mkdir mirdeep_runs/run_30_11_2022_t_14_03_22

[1;31mError: [0mGenome file ../../03_db/chrygca710275/penref.fasta has not allowed whitespaces in its first identifier

Hi how do I overcome this from my reference genome for penicillium.

mschilli87 commented 2 years ago

Just change the FASTA file before running miRDeep2.