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rajewsky-lab / novosparc

BSD 3-Clause "New" or "Revised" License
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The object hold Moran’s score #22

Closed I-Hao closed 4 years ago

I-Hao commented 4 years ago

Hi, Thank you for providing this powerful tool. In applying this tool to my data, I have problems in identifying the objects holding the data I’m looking for, could you help me to identify them?

  1. Which object holds Moran’s score?
    1. Which object holds the p-value for each gene?
    2. Which object holds the coordinate of the input cells in the reconstructed space?

Thank you for your help, really appreciate it. I-Hao

nukappa commented 4 years ago

hi, thanks for the comments, we're soon pushing a version containing this, we just got stuck in a some dependencies problems.

enessenel commented 4 years ago

Hi, we have pushed the version 0.3.10 with 7bf55f986ca1ef213a89c04813969a38c30ad2b5 where Moran's I is implemented. 1-2) You can run the algorithm with the morans function package. This will return a list of informative genes and save the morans score and p-values to a file morans.txt 3) you can use the gw matrix object to check the mapped locations of the cells (there is also a function called plot_mapped_cells() to plot the mappings)