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rajewsky-lab / novosparc

BSD 3-Clause "New" or "Revised" License
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getting original cell identities with target space locations #57

Open shermas opened 2 years ago

shermas commented 2 years ago

Hey,

I would like to be able to see which cell identity maps to which location in my target space. I followed the pipeline for "Validate localized mapping of individual cells" in the tutorial, but this works on cell numbers instead of the barcodes. Do the numbers directly relate to the AnnData list of barcodes from the single-cell data?

Thanks, Shachar

nukappa commented 2 years ago

We have a function that is still in a pull request, until we pull it to the main repo you can try to use it. See commit b9c99bb829ea33d29ad2c7bfec0c098a76790bb4.