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rajewsky-lab / openst

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
https://rajewsky-lab.github.io/openst/
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Lost of files to reproduce the tutorial #33

Closed jefferyUstc closed 5 months ago

jefferyUstc commented 5 months ago

Hi, openst team, great work for spatial omics, I'm working on the tutorial provided in the docs (Adult mouse hippocampus), when it comes to the preprocessing_sequencing , It seems I can't find the necessary files to complete this step below. Could you please provide the download links for and ?

spacemake config add_species \
   --name mouse \
   --reference genome \
   --sequence <path_to_genome.fa> \
   --annotation <path_to_genome_annotation.gtf>

spacemake config add_species \
   --name mouse \
   --reference rRNA \
   --sequence <path_to_rRNA_sequences.fa>

spacemake config add_species \
   --name mouse \
   --reference phiX \
   --sequence <path_to_phiX_genome.fa>
danilexn commented 5 months ago

Hi! We are uploading all genome/annotation files and will be available in a few minutes. Thanks for the feedback!

danilexn commented 5 months ago

This was fixed by #34