Open nukappa opened 8 years ago
looks fine, was probably a matter of different annotation versions. a unit test has to be written to show that everything works ok.
It seems there might still be a bug here: https://github.com/rajewsky-lab/polyA/pull/64#issuecomment-226223033
Once https://github.com/rajewsky-lab/polyA/pull/72/commits/021f7ec694bde85f079d90796888206348d6b8b9 is merged to master
, I'll merge it into new_tests
to see if this issue is finally resolved.
ok cool. I will test and merge #72 now.
related to the current issue, in one of your next pushes you can also improve the code in the merge_pAi_and_utr_intervals
function: cast all start_position
and end_position
to integers: int(start_position)
. I wouldn't open a new pull request just for that. For now, even if it compares strings, i think it's doing it fine...
I'll changed this issue's title & labels so we won't forget about that.
probably in the merge_pAi function, some numbers have to be cast into integers