error when run 'mamba env create -f environment.yaml'

rajewsky-lab / spacemake

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error when run 'mamba env create -f environment.yaml' #124

Closed lanshui98 closed 2 months ago

lanshui98 commented 2 months ago

Got this error:

Collecting package metadata (repodata.json): done Solving environment: failed

ResolvePackageNotFound:

star[version='>=2.7.1a']
bcl2fastq2[version='>=2.19']
sambamba[version='>=0.6.8']

Can you help with this?

nukappa commented 2 months ago

Hi, are you by any chance trying to install spacemake on MacOS? We know that certain packages (bcl2fastq being one) are not easily available there.

lanshui98 commented 2 months ago

Yes I was trying to install it on MacOS. I tried to install it on Windows instead. But I was reviewing the star package which doesn't recommend Windows. Should I try Linux instead?

nukappa commented 2 months ago

Yes, if you have access to Linux, that would be preferred. You might get around with using the Linux Subsystem in Windows, though.

I'll close this issue now, feel free to open another one if you have further issues.