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beast-mcmc
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BEAUti generator for *BEAST + calibrated Yule is broken
#577
GoogleCodeExporter
closed
9 years ago
1
BEAUti calibrated Yule validation is missing one logic
#576
GoogleCodeExporter
closed
9 years ago
1
BEUAti should check for '--' in generated XML comments.
#575
GoogleCodeExporter
closed
9 years ago
1
beauti generates an incorrect prior specification
#574
GoogleCodeExporter
closed
9 years ago
6
BEAUti taxon set panel taxon set table incorrectly auto selection
#573
GoogleCodeExporter
closed
9 years ago
1
BEAUti tmrca gives wrong prefix
#572
GoogleCodeExporter
closed
9 years ago
1
TN93 substitution model
#571
GoogleCodeExporter
closed
9 years ago
7
bug of unique attribute in pattern lists
#570
GoogleCodeExporter
closed
9 years ago
1
BirthDeathEpidemiologyModel bug
#569
GoogleCodeExporter
closed
9 years ago
6
same pattern id given to two different partitions
#568
GoogleCodeExporter
closed
9 years ago
2
Error when running an xml after changing some calibrations
#567
GoogleCodeExporter
closed
9 years ago
1
Tracer does not update y-axis properly for multiple traces
#566
GoogleCodeExporter
opened
9 years ago
2
hasIdenticalTaxa(List<AbstractPartitionData> partitionDataList) gives wrong boolean
#565
GoogleCodeExporter
closed
9 years ago
1
kCGErrorIllegalArgument when running BEAST
#564
GoogleCodeExporter
closed
9 years ago
1
Speciation: Birth-death serially sampled model update
#563
GoogleCodeExporter
opened
9 years ago
1
BEAUTi : Birth Death Epidemiology Model update
#562
GoogleCodeExporter
closed
9 years ago
1
BEAST main adds an argument to add additional parsers
#561
GoogleCodeExporter
opened
9 years ago
1
wrong dependency to dr.evomodel.newtreelikelihood.TreeLikelihood
#560
GoogleCodeExporter
closed
9 years ago
1
BEAUti throws exception if adding any additional partition with different taxa when already having data partitions
#559
GoogleCodeExporter
closed
9 years ago
1
duplicate method to check different taxa in BEAUti
#558
GoogleCodeExporter
closed
9 years ago
1
Removing a partition doesn't remove its unique taxa
#557
GoogleCodeExporter
closed
9 years ago
1
BEAUti "birth-death serially sampled model" correction required
#556
GoogleCodeExporter
closed
9 years ago
1
Does sequence error model have to apply to every sequence data partition?
#555
GoogleCodeExporter
closed
9 years ago
2
SequenceErrorModelComponentOptions did not create parameters properly
#554
GoogleCodeExporter
closed
9 years ago
1
BEAUti sampling on all individual tips should use randomWalkOperator
#553
GoogleCodeExporter
closed
9 years ago
1
BEAUTi keeps generating a dialog when load a binary datafile
#552
GoogleCodeExporter
closed
9 years ago
1
remove rootHeight="?" from <coalescentTree> for MicroSat data
#551
GoogleCodeExporter
closed
9 years ago
1
MicroSat pattern does not generate properly
#550
GoogleCodeExporter
closed
9 years ago
1
BeautiOptions.updateAll() stop user to customize clock rates
#549
GoogleCodeExporter
closed
9 years ago
1
Beauti does not generate functional xml for msat data analysis
#548
GoogleCodeExporter
closed
9 years ago
4
out of boundary if ENABLE_ANCESTRAL_STATES = false;
#547
GoogleCodeExporter
closed
9 years ago
1
disable link tree prior function in BEAUti if using EBSP and GMRF
#546
GoogleCodeExporter
closed
9 years ago
1
BEAUti taxon set compatibility should be focused on each tree
#545
GoogleCodeExporter
closed
9 years ago
1
show Calibrated Yule in tree prior drop list
#544
GoogleCodeExporter
closed
9 years ago
1
BEAUti parameter getLowerBound() and getUpperBound() overwrite changes
#543
GoogleCodeExporter
closed
9 years ago
1
Posterior and Likelihood show "?", Extremely low Prior, and Turning on partial likelihood scaling to avoid precision loss
#542
GoogleCodeExporter
closed
9 years ago
3
BEAUti generates wrong xml when enforcing a uniform prior on node ages
#541
GoogleCodeExporter
closed
9 years ago
2
MCMC chain limited to 2^31-1 (Integer.MAX_VALUE)
#540
GoogleCodeExporter
closed
9 years ago
1
use the same background in citation text area in Tree panel
#539
GoogleCodeExporter
closed
9 years ago
1
move tree prior panel to the right of table
#538
GoogleCodeExporter
closed
9 years ago
2
Robust counting code generation not producing good XML
#537
GoogleCodeExporter
closed
9 years ago
2
Species tree prior is locked
#536
GoogleCodeExporter
closed
9 years ago
1
SpeciesTreesPanel are not necessary
#535
GoogleCodeExporter
closed
9 years ago
1
*BEAST needs validate species set
#534
GoogleCodeExporter
closed
9 years ago
1
Taxon set validation fires twice
#533
GoogleCodeExporter
closed
9 years ago
1
compileNativeLinux.sh uses non-optimal / fixed compile settings
#532
GoogleCodeExporter
closed
9 years ago
2
Need an 'undefined' prior choice for most parameters
#531
GoogleCodeExporter
closed
9 years ago
1
Prior choice for root height no longer includes 'undefined'
#530
GoogleCodeExporter
closed
9 years ago
1
proper priors to determine calibration in BEAUti
#529
GoogleCodeExporter
closed
9 years ago
1
the BEAST parser for UniformPrior should throw a parser exception if you attempt to give a bound at infinity.
#528
GoogleCodeExporter
closed
9 years ago
1
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