Fix R CMD CHECK notes and warnings

ramhiser / sparsediscrim

Sparse and Regularized Discriminant Analysis in R

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In order to update the package on CRAN, need to fix the following notes and warnings from devtools::check().

> check()
 Updating sparsediscrim documentation
 Loading sparsediscrim
...
Missing link or links in documentation object 'hdrda_cv.Rd':
   ‘ggplot2’

 See section 'Cross-references' in the 'Writing R Extensions' manual.

 * checking for missing documentation entries ... OK
 * checking for code/documentation mismatches ... OK
 * checking Rd \usage sections ... WARNING
 Duplicated \argument entries in documentation object 'dlda':
   ‘x’ ‘...’

 Undocumented arguments in documentation object 'dmvnorm_diag'
   ‘sigma’
 Documented arguments not in \usage in documentation object 'dmvnorm_diag':
   ‘cov’

 Duplicated \argument entries in documentation object 'dqda':
   ‘x’ ‘...’

 Duplicated \argument entries in documentation object 'hdrda':
   ‘x’ ‘...’

 Duplicated \argument entries in documentation object 'hdrda_cv':
   ‘x’ ‘...’

 Duplicated \argument entries in documentation object 'lda_pseudo':
   ‘x’ ‘...’

 Duplicated \argument entries in documentation object 'lda_schafer':
   ‘x’ ‘...’ ‘...’

 Duplicated \argument entries in documentation object 'lda_thomaz':
   ‘x’ ‘...’

 Duplicated \argument entries in documentation object 'mdeb':
   ‘x’ ‘...’

 Duplicated \argument entries in documentation object 'mdmeb':
   ‘x’ ‘...’

 Duplicated \argument entries in documentation object 'mdmp':
   ‘x’ ‘...’

 Duplicated \argument entries in documentation object 'sdlda':
   ‘x’ ‘...’

Duplicated \argument entries in documentation object 'sdqda':
   ‘x’ ‘...’

 Duplicated \argument entries in documentation object 'smdlda':
   ‘x’ ‘...’

 Duplicated \argument entries in documentation object 'smdqda':
   ‘x’ ‘...’

 Functions with \usage entries need to have the appropriate \alias
 entries, and all their arguments documented.
 The \usage entries must correspond to syntactically valid R code.
 See chapter ‘Writing R documentation files’ in the ‘Writing R
 Extensions’ manual.
 * checking Rd contents ... OK
 * checking for unstated dependencies in examples ... OK
 * checking examples ... OK
 * DONE

 Status: 2 WARNINGs, 1 NOTE
 See
   ‘/private/var/folders/7d/pcy077cj44n0cs351w0mv6q40000gn/T/Rtmp9xXf5N/sparsediscrim.Rcheck/00check.log’
 for details.

 R CMD check results
 0 errors | 2 warnings | 1 note

* checking Rd \usage sections ... WARNING Duplicated \argument entries in documentation object 'dlda': ‘x’ ‘...’ Undocumented arguments in documentation object 'dmvnorm_diag' ‘sigma’ Documented arguments not in \usage in documentation object 'dmvnorm_diag': ‘cov’ Duplicated \argument entries in documentation object 'dqda': ‘x’ ‘...’ Duplicated \argument entries in documentation object 'hdrda': ‘x’ ‘...’ Duplicated \argument entries in documentation object 'hdrda_cv': ‘x’ ‘...’ Duplicated \argument entries in documentation object 'lda_pseudo': ‘x’ ‘...’ Duplicated \argument entries in documentation object 'lda_schafer': ‘x’ ‘...’ ‘...’ Duplicated \argument entries in documentation object 'lda_thomaz': ‘x’ ‘...’ Duplicated \argument entries in documentation object 'mdeb': ‘x’ ‘...’ Duplicated \argument entries in documentation object 'mdmeb': ‘x’ ‘...’ Duplicated \argument entries in documentation object 'mdmp': ‘x’ ‘...’ Duplicated \argument entries in documentation object 'sdlda': ‘x’ ‘...’ Duplicated \argument entries in documentation object 'sdqda': ‘x’ ‘...’ Duplicated \argument entries in documentation object 'smdlda': ‘x’ ‘...’ Duplicated \argument entries in documentation object 'smdqda': ‘x’ ‘...’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * DONE Status: 1 WARNING See ‘/private/var/folders/7d/pcy077cj44n0cs351w0mv6q40000gn/T/Rtmpr2JLnU/sparsediscrim.Rcheck/00check.log’ for details. R CMD check results 0 errors | 1 warning | 0 notes

ramhiser / sparsediscrim

Fix R CMD CHECK notes and warnings #35