search

ramiromagno / gwasrapidd

gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
https://rmagno.eu/gwasrapidd/
Other
89 stars 15 forks source link

Extract other information using gwasrapidd #23

Closed jiyue1214 closed 3 years ago

jiyue1214 commented 3 years ago

Hi,

Thanks a lot for developing the package. I am enjoying using the gwasrapidd to extract information from GWAS catalog API.

Could I know whether I can define other columns to be extracted or only the column in class?studies (for example, besides reported traits in the table, I also want to extract curated traits and background traits like the webpage search result) ?

Thank you for your help Yue

ramiromagno commented 3 years ago

Hi @jiyue1214:

Thank you for your question.

Unfortunately curated traits and background traits retrieval is not yet implemented in gwasrapidd.

This feature has been recently added to the GWAS Catalog, August this year I believe, and still has to be implemented at the REST API level which gwasrapidd uses to retrieve the data (see the Section API in https://ebispot.github.io/gwas-blog/background-trait-update).

I will try to implement this feature as soon as the GWAS Catalog makes it available at the API level. :)