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ramnathv / slidify

Generate reproducible html5 slides from R markdown
http://www.slidify.org
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Instal phyloseq #527

Open HMP2022 opened 2 years ago

HMP2022 commented 2 years ago

image Please assist with installing phyloseq#Install phyloseq - RUN ONLY THE FIRST TIME

if (!require("BiocManager", quietly = TRUE))

  • install.packages("BiocManager") Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23 ucrt) BiocManager::install("phyloseq") 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories: CRAN: https://cran.rstudio.com/

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23 ucrt) Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.2.1/library packages: MASS, nlme, survival Old packages: 'statmod'

I am getting this error

AniMukherjee commented 1 year ago

Hi @HMP2022,

sorry I do not have an answer to your question. but presently I'm stuck with slidify general installation. every time I use slidify('index.Rmd'); I'm getting error Error in markdownExtensions() : could not find function "markdownExtensions". can you please help on this? I'm not getting help anywhere.