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ramp-kits / autism

Data Challenge on Autism Spectrum Disorder detection
https://paris-saclay-cds.github.io/autism_challenge/
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Add gcn package to environment #32

Open SaeedFarahani opened 6 years ago

SaeedFarahani commented 6 years ago

add gcn package to standard environment

gcn https://github.com/parisots/gcn

and dependencies of this package

tensorflow (>0.12) networkx joblib

glemaitre commented 6 years ago

The repo that you mentioned is a fork. Why shall installed a fork repository and not the original one?

SaeedFarahani commented 6 years ago

We use "Deep_GCN" model that implement in this version.

kegl commented 6 years ago

We added gcn to the backend.

SaeedFarahani commented 6 years ago

thanks a lot.

aboucaud commented 6 years ago

We added gcn to the backend.

Still, as described in #5, we should make sure we keep track of the software stack installed networkx, joblib, tensorflow on top of the gcn code, so others participants don't have to request it.

glemaitre commented 6 years ago

We can see the following error while using GCN:

absl.flags._exceptions.UnrecognizedFlagError: Unknown command line flag 'save-y-preds'

In case that you are passing flags be aware that the test submission is called on the backend with an extra argument:

ramp_test_submission --submission my_submission --save-y-preds

So if you are catching all arguments be aware that save-y-preds is also there and you need to filter it.