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randy3k / radian

A 21 century R console
MIT License
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radian crash #287

Open jatom-tech opened 3 years ago

jatom-tech commented 3 years ago

Hello I use radian for executing R within vs code and it is failing. I hope you can help.

My errors are like the following:

image

Screen Shot 2021-06-11 at 15 35 59
randy3k commented 3 years ago

I think that you didn't activate the right condo environment. radian is install in the base of anaconda but you have activated a virtual environment.

jatom-tech commented 3 years ago

Thanks for info, but leaving the VE theres still an issue

See pic.

On 11 Jun 2021, at 16.30, Randy Lai @.***> wrote:

I think that you didn't activate the right condo environment. radian is install in the base of anaconda but you have activated a virtual environment.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/randy3k/radian/issues/287#issuecomment-859622683, or unsubscribe https://github.com/notifications/unsubscribe-auth/ASGZ3OIJONBJXGDQGDPCBL3TSIMYBANCNFSM46QYGTBQ.

randy3k commented 3 years ago

Ya, you have to activate the base anaconda env.

jatom-tech commented 3 years ago

yes i am not so experienced in python vs code and radian, but still the same

On 11 Jun 2021, at 18.37, Randy Lai @.***> wrote:

Ya, you have to activate the base anaconda env.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/randy3k/radian/issues/287#issuecomment-859704727, or unsubscribe https://github.com/notifications/unsubscribe-auth/ASGZ3ON6M7CTQK7LWCURMLDTSI3UNANCNFSM46QYGTBQ.

jatom-tech commented 3 years ago

Trying to start radian gives me this

(base) Jans-MacBook-Pro:my_rvs janthomsen$ conda deactivate Jans-MacBook-Pro:my_rvs janthomsen$ conda activate (base) Jans-MacBook-Pro:my_rvs janthomsen$ radian Traceback (most recent call last): File "/Users/janthomsen/opt/anaconda3/bin/radian", line 8, in sys.exit(main()) File "/Users/janthomsen/opt/anaconda3/lib/python3.8/site-packages/radian/init.py", line 101, in main RadianApplication(r_home, ver=version).run(options) File "/Users/janthomsen/opt/anaconda3/lib/python3.8/site-packages/radian/radianapp.py", line 94, in run rchitect.init(args=args, register_signal_handlers=True) File "/Users/janthomsen/opt/anaconda3/lib/python3.8/site-packages/rchitect/setup.py", line 46, in init raise Exception(load_lib_error()) Exception: Cannot load shared library: dlopen(/Users/janthomsen/opt/anaconda3/lib/R/lib/libR.dylib, 10): Library not loaded: @rpath/libreadline.6.2.dylib Referenced from: /Users/janthomsen/opt/anaconda3/lib/R/lib/libR.dylib Reason: image not found (base) Jans-MacBook-Pro:my_rvs janthomsen$

On 11 Jun 2021, at 18.37, Randy Lai @.***> wrote:

Ya, you have to activate the base anaconda env.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/randy3k/radian/issues/287#issuecomment-859704727, or unsubscribe https://github.com/notifications/unsubscribe-auth/ASGZ3ON6M7CTQK7LWCURMLDTSI3UNANCNFSM46QYGTBQ.

jatom-tech commented 3 years ago

executing R from vs code

(base) Jans-MacBook-Pro:my_rvs janthomsen$ conda deactivate Jans-MacBook-Pro:my_rvs janthomsen$ conda activate (base) Jans-MacBook-Pro:my_rvs janthomsen$ radian Traceback (most recent call last): File "/Users/janthomsen/opt/anaconda3/bin/radian", line 8, in sys.exit(main()) File "/Users/janthomsen/opt/anaconda3/lib/python3.8/site-packages/radian/init.py", line 101, in main RadianApplication(r_home, ver=version).run(options) File "/Users/janthomsen/opt/anaconda3/lib/python3.8/site-packages/radian/radianapp.py", line 94, in run rchitect.init(args=args, register_signal_handlers=True) File "/Users/janthomsen/opt/anaconda3/lib/python3.8/site-packages/rchitect/setup.py", line 46, in init raise Exception(load_lib_error()) Exception: Cannot load shared library: dlopen(/Users/janthomsen/opt/anaconda3/lib/R/lib/libR.dylib, 10): Library not loaded: @rpath/libreadline.6.2.dylib Referenced from: /Users/janthomsen/opt/anaconda3/lib/R/lib/libR.dylib Reason: image not found (base) Jans-MacBook-Pro:my_rvs janthomsen$

On 11 Jun 2021, at 18.37, Randy Lai @.***> wrote:

Ya, you have to activate the base anaconda env.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/randy3k/radian/issues/287#issuecomment-859704727, or unsubscribe https://github.com/notifications/unsubscribe-auth/ASGZ3ON6M7CTQK7LWCURMLDTSI3UNANCNFSM46QYGTBQ.

randy3k commented 3 years ago

I think these is something fishy in your anaconda setup. Perhaps some libraries are updated or you have serval copies of conda which conflict each other.

jatom-tech commented 3 years ago

I think you could be right, i have anakonda3, conda and a miniconda. i dont know if you are only supposed to have one or?

what would you recommend?

conda list

py38hf1fa96c_1
brotlipy 0.7.0 py38h9ed2024_1003
bzip2 1.0.8 h1de35cc_0
c-ares 1.17.1 h9ed2024_0
ca-certificates 2021.5.30 h033912b_0 conda-forge cachetools 4.2.2 pypi_0 pypi catalogue 1.0.0 pypi_0 pypi certifi 2021.5.30 py38h50d1736_0 conda-forge cffi 1.14.5 py38h2125817_0
chardet 4.0.0 py38hecd8cb5_1003
click 7.1.2 pyhd3eb1b0_0
cloudpickle 1.6.0 py_0
clyent 1.2.2 py38_1
colorama 0.4.4 pyhd3eb1b0_0
colorlover 0.3.0 pypi_0 pypi conda 4.10.1 py38h50d1736_0 conda-forge conda-build 3.21.4 py38hecd8cb5_0
conda-content-trust 0.1.1 pyhd3eb1b0_0
conda-env 2.6.0 1
conda-package-handling 1.7.3 py38h9ed2024_1
conda-repo-cli 1.0.4 pyhd3eb1b0_0
conda-token 0.3.0 pyhd3eb1b0_0
conda-verify 3.4.2 py_1
configobj 5.0.6 pypi_0 pypi contextlib2 0.6.0.post1 py_0
cryptography 3.4.7 py38h2fd3fbb_0
cufflinks 0.17.3 pypi_0 pypi curl 7.71.1 hb0a8c7a_1
cycler 0.10.0 py38_0
cymem 2.0.5 pypi_0 pypi cython 0.29.23 py38h23ab428_0
cytoolz 0.11.0 py38haf1e3a3_0
dask 2021.4.0 pyhd3eb1b0_0
dask-core 2021.4.0 pyhd3eb1b0_0
databricks-cli 0.14.3 pypi_0 pypi dbus 1.13.18 h18a8e69_0
decorator 5.0.6 pyhd3eb1b0_0
defusedxml 0.7.1 pyhd3eb1b0_0
diff-match-patch 20200713 py_0
distributed 2021.4.0 py38hecd8cb5_0
docker 5.0.0 pypi_0 pypi docutils 0.17 py38hecd8cb5_1
ecos 2.0.7.post1 py38h2ec4a77_3 sebp entrypoints 0.3 py38_0
envisage 6.0.0 pypi_0 pypi et_xmlfile 1.0.1 py_1001
execnet 1.8.1 pypi_0 pypi expat 2.3.0 h23ab428_2
fastcache 1.1.0 py38h1de35cc_0
filelock 3.0.12 pyhd3eb1b0_1
flake8 3.9.0 pyhd3eb1b0_0
flask 1.1.2 pyhd3eb1b0_0
flatbuffers 1.12 pypi_0 pypi formulaic 0.2.3 pypi_0 pypi freetype 2.10.4 ha233b18_0
fsspec 0.9.0 pyhd3eb1b0_0
funcy 1.16 pypi_0 pypi future 0.18.2 py38_1
gast 0.4.0 pypi_0 pypi geos 3.8.0 hb1e8313_0 anaconda get_terminal_size 1.0.0 h7520d66_0
gettext 0.21.0 h7535e17_0
gevent 21.1.2 py38h9ed2024_1
gitdb 4.0.7 pypi_0 pypi gitpython 3.1.17 pypi_0 pypi glib 2.68.1 hdf23fa2_0
glob2 0.7 pyhd3eb1b0_0
gmp 6.2.1 h23ab428_2
gmpy2 2.0.8 py38h6ef4df4_3
google-auth 1.30.1 pypi_0 pypi google-auth-oauthlib 0.4.4 pypi_0 pypi google-pasta 0.2.0 pypi_0 pypi greenlet 1.0.0 py38h23ab428_2
grpcio 1.34.1 pypi_0 pypi gsl 2.4 h1de35cc_4
gunicorn 20.1.0 pypi_0 pypi h5py 3.1.0 pypi_0 pypi hdf5 1.10.4 hfa1e0ec_0
heapdict 1.0.1 py_0
html5lib 1.1 py_0
htmlmin 0.1.12 pypi_0 pypi icu 58.2 h0a44026_3
idna 2.10 pyhd3eb1b0_0
imagehash 4.2.0 pypi_0 pypi imageio 2.9.0 pyhd3eb1b0_0
imagesize 1.2.0 pyhd3eb1b0_0
importlib-metadata 3.10.0 py38hecd8cb5_0
importlib-resources 5.1.4 pypi_0 pypi importlib_metadata 3.10.0 hd3eb1b0_0
iniconfig 1.1.1 pyhd3eb1b0_0
intel-openmp 2021.2.0 hecd8cb5_564
interface-meta 1.2.3 pypi_0 pypi intervaltree 3.1.0 py_0
ipykernel 5.3.4 py38h5ca1d4c_0
ipython 7.22.0 py38h01d92e1_0
ipython_genutils 0.2.0 pyhd3eb1b0_1
ipywidgets 7.6.3 pyhd3eb1b0_1
isort 5.8.0 pyhd3eb1b0_0
itsdangerous 1.1.0 pyhd3eb1b0_0
jbig 2.1 h4d881f8_0
jdcal 1.4.1 py_0
jedi 0.17.2 py38hecd8cb5_1
jinja2 2.11.3 pyhd3eb1b0_0
joblib 1.0.1 pyhd3eb1b0_0
jpeg 9b he5867d9_2
json5 0.9.5 py_0
jsonschema 3.2.0 py_2
jupyter 1.0.0 py38_7
jupyter-packaging 0.7.12 pyhd3eb1b0_0
jupyter_client 6.1.12 pyhd3eb1b0_0
jupyter_console 6.4.0 pyhd3eb1b0_0
jupyter_core 4.7.1 py38hecd8cb5_0
jupyter_server 1.4.1 py38hecd8cb5_0
jupyterlab 3.0.16 pyhd8ed1ab_0 conda-forge jupyterlab_pygments 0.1.2 py_0
jupyterlab_server 2.4.0 pyhd3eb1b0_0
jupyterlab_widgets 1.0.0 pyhd3eb1b0_1
keras 2.4.3 pypi_0 pypi keras-nightly 2.5.0.dev2021032900 pypi_0 pypi keras-preprocessing 1.1.2 pypi_0 pypi keyring 22.3.0 py38hecd8cb5_0
kiwisolver 1.3.1 py38h23ab428_0
krb5 1.18.2 h75d18d8_0
lazy-object-proxy 1.6.0 py38h9ed2024_0
lcms2 2.12 hf1fd2bf_0
libarchive 3.4.2 haa3ed63_0
libcurl 7.71.1 h8a08a2b_1
libcxx 11.1.0 habf9029_0 conda-forge libedit 3.1.20210216 h9ed2024_1
libev 4.33 haf1e3a3_0
libffi 3.3 hb1e8313_2
libgcc 4.8.5 hdbeacc1_10
libgfortran 3.0.1 h93005f0_2
libiconv 1.16 h1de35cc_0
liblief 0.10.1 h0a44026_0
libllvm10 10.0.1 h76017ad_5
libllvm9 9.0.1 h7475705_1 conda-forge libpng 1.6.37 ha441bb4_0
libsodium 1.0.18 h1de35cc_0
libspatialindex 1.9.3 h23ab428_0
libssh2 1.9.0 ha12b0ac_1
libtiff 4.2.0 h87d7836_0
libuv 1.40.0 haf1e3a3_0
libwebp-base 1.2.0 h9ed2024_0
libxgboost 1.3.3 h23ab428_0
libxml2 2.9.10 h7cdb67c_3
libxslt 1.1.34 h83b36ba_0
lifelines 0.26.0 pypi_0 pypi lineedit 0.1.6 pypi_0 pypi llvm-openmp 10.0.0 h28b9765_0
llvmlite 0.36.0 py38he4411ff_4
locket 0.2.1 py38hecd8cb5_1
lxml 4.6.3 py38h26b266a_0
lz4-c 1.9.3 h23ab428_0
lzo 2.10 haf1e3a3_2
mako 1.1.4 pypi_0 pypi markdown 3.3.4 pypi_0 pypi markupsafe 1.1.1 py38h1de35cc_1
matplotlib 3.4.2 pypi_0 pypi matplotlib-base 3.3.4 py38h8b3ea08_0
mayavi 4.7.3 pypi_0 pypi mccabe 0.6.1 py38_1
missingno 0.4.2 pypi_0 pypi mistune 0.8.4 py38h1de35cc_1001
mkl 2019.4 233
mkl-service 2.3.0 py38h9ed2024_0
mkl_fft 1.3.0 py38ha059aab_0
mkl_random 1.1.1 py38h959d312_0
mlflow 1.17.0 pypi_0 pypi mlxtend 0.18.0 pypi_0 pypi mock 4.0.3 pyhd3eb1b0_0
more-itertools 8.7.0 pyhd3eb1b0_0
mpc 1.1.0 h6ef4df4_1
mpfr 4.0.2 h9066e36_1
mpmath 1.2.1 py38hecd8cb5_0
msgpack-python 1.0.2 py38hf7b0b51_1
multimethod 1.4 pypi_0 pypi multipledispatch 0.6.0 py38_0
murmurhash 1.0.5 pypi_0 pypi mypy_extensions 0.4.3 py38_0
navigator-updater 0.2.1 py38_0
nbclassic 0.2.6 pyhd3eb1b0_0
nbclient 0.5.3 pyhd3eb1b0_0
nbconvert 6.0.7 py38_0
nbformat 5.1.3 pyhd3eb1b0_0
ncurses 6.2 h0a44026_1
nest-asyncio 1.5.1 pyhd3eb1b0_0
networkx 2.5 py_0
ninja 1.10.2 hf7b0b51_1
nltk 3.6.1 pyhd3eb1b0_0
nose 1.3.7 pyhd3eb1b0_1006
notebook 6.3.0 py38hecd8cb5_0
numba 0.53.1 py38hb2f4e1b_0
numexpr 2.7.3 py38h16bde0e_0
numpy 1.19.5 pypi_0 pypi numpy-base 1.19.2 py38hcfb5961_0
numpydoc 1.1.0 pyhd3eb1b0_1
oauthlib 3.1.0 pypi_0 pypi olefile 0.46 py_0
openpyxl 3.0.7 pyhd3eb1b0_0
openssl 1.1.1k h0d85af4_0 conda-forge opt-einsum 3.3.0 pypi_0 pypi osqp 0.6.2.post0 pypi_0 pypi packaging 20.9 pyhd3eb1b0_0
pandas 1.2.4 py38h23ab428_0
pandas-profiling 3.0.0 pypi_0 pypi pandoc 2.12 hecd8cb5_0
pandocfilters 1.4.3 py38hecd8cb5_1
parso 0.7.0 py_0
partd 1.2.0 pyhd3eb1b0_0
path 15.1.2 py38hecd8cb5_0
path.py 12.5.0 0
pathlib2 2.3.5 py38hecd8cb5_2
pathspec 0.7.0 py_0
pathtools 0.1.2 py_1 conda-forge patsy 0.5.1 py38_0
pcre 8.44 hb1e8313_0
pep8 1.7.1 py38_0
pexpect 4.8.0 pyhd3eb1b0_3
phik 0.11.2 pypi_0 pypi pickleshare 0.7.5 pyhd3eb1b0_1003
pillow 8.2.0 py38h5270095_0
pip 21.1.2 pypi_0 pypi pkginfo 1.7.0 py38hecd8cb5_0
plac 1.1.3 pypi_0 pypi plotly 4.14.3 pypi_0 pypi pluggy 0.13.1 py38hecd8cb5_0
ply 3.11 py38_0
preshed 3.0.5 pypi_0 pypi proj 6.2.1 hfd5b9e3_0 anaconda prometheus-flask-exporter 0.18.2 pypi_0 pypi prometheus_client 0.10.1 pyhd3eb1b0_0
prompt-toolkit 3.0.17 pyh06a4308_0
prompt_toolkit 3.0.17 hd3eb1b0_0
protobuf 3.17.1 pypi_0 pypi psutil 5.8.0 py38h9ed2024_1
ptyprocess 0.7.0 pyhd3eb1b0_2
py 1.10.0 pyhd3eb1b0_0
py-lief 0.10.1 py38haf313ee_0
py-xgboost 1.3.3 py38hecd8cb5_0
pyasn1 0.4.8 pypi_0 pypi pyasn1-modules 0.2.8 pypi_0 pypi pycodestyle 2.6.0 pyhd3eb1b0_0
pycosat 0.6.3 py38h1de35cc_1
pycparser 2.20 py_2
pycurl 7.43.0.6 py38hddc9c9b_0
pydantic 1.8.2 pypi_0 pypi pydocstyle 6.0.0 pyhd3eb1b0_0
pyerfa 2.0.0 py38h9ed2024_0
pyface 7.3.0 pypi_0 pypi pyflakes 2.2.0 pyhd3eb1b0_0
pygments 2.8.1 pyhd3eb1b0_0
pyldavis 3.2.2 pypi_0 pypi pylint 2.7.4 py38hecd8cb5_1
pyls-black 0.4.6 hd3eb1b0_0
pyls-spyder 0.3.2 pyhd3eb1b0_0
pynndescent 0.5.2 pypi_0 pypi pyod 0.8.8 pypi_0 pypi pyodbc 4.0.30 py38h0a44026_0
pyopenssl 20.0.1 pyhd3eb1b0_1
pyparsing 2.4.7 pyhd3eb1b0_0
pyproj 2.6.1.post1 py38h6d9c95c_1 anaconda pyqt 5.9.2 py38h655552a_2
pyrsistent 0.17.3 py38haf1e3a3_0
pyshp 2.1.2 py_0 anaconda pysocks 1.7.1 py38_1
pytables 3.6.1 py38h4727e94_0
pytest 6.2.3 py38hecd8cb5_2
pytest-forked 1.3.0 pypi_0 pypi pytest-xdist 2.2.1 pypi_0 pypi python 3.8.8 h88f2d9e_5
python-dateutil 2.8.1 pyhd3eb1b0_0
python-editor 1.0.4 pypi_0 pypi python-graphviz 0.16 pypi_0 pypi python-jsonrpc-server 0.4.0 py_0
python-language-server 0.36.2 pyhd3eb1b0_0
python-libarchive-c 2.9 pyhd3eb1b0_1
python.app 3 py38h9ed2024_0
python_abi 3.8 1_cp38 conda-forge pytorch 1.4.0 cpu_py38hf9bb1df_0
pytz 2021.1 pyhd3eb1b0_0
pywavelets 1.1.1 py38haf1e3a3_2
pyyaml 5.4.1 py38h9ed2024_1
pyzmq 20.0.0 py38h23ab428_1
qdarkstyle 2.8.1 py_0
qdldl 0.1.5.post0 pypi_0 pypi qt 5.9.7 h468cd18_1
qtawesome 1.0.2 pyhd3eb1b0_0
qtconsole 5.0.3 pyhd3eb1b0_0
qtpy 1.9.0 py_0
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zlib 1.2.11 h1de35cc_3
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zstd 1.4.5 h41d2c2f_0
(base) Jans-MacBook-Pro:~ janthomsen$

On 11 Jun 2021, at 21.06, Randy Lai @.***> wrote:

I think these is something fishy in your anaconda setup. Perhaps some libraries are updated or you have serval copies of conda which conflict each other.

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