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randy3k / radian

A 21 century R console
MIT License
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radian fails to load package while base R works without a problem #466

Open nickhir opened 5 months ago

nickhir commented 5 months ago

I want to switch to radian, however, some of the packages that I use on a daily basis fail to load when trying it with radian. The interesting thing is, that they load without any problem when I use base R. This is the error that occurs:

Error: package or namespace load failed for ‘GenomeInfoDb’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/R/x86_64-pc-linux-gnu-library/4.2/RCurl/libs/RCurl.so':
  /usr/local/software/archive/linux-scientific7-x86_64/gcc-9/gcc-9.3.0-qszxcci5frtw4aul3m44oarpvxzyrgpp/lib64/libstdc++.so.6: version `GLIBCXX_3.4.30' not found (required by /rds/user/hpc-work/software/micromamba/bin/../lib/./libicuuc.so.73)
Error: package ‘GenomeInfoDb’ could not be loaded

I checked and /home/R/x86_64-pc-linux-gnu-library/4.2/RCurl/libs/RCurl.so does exist.

This is the output of radian --version:

radian version: 0.6.9
r executable: /usr/local/R/4.2.2/lib64/R/bin/R
r version: 4.2.2
python executable: /rds/user/software/micromamba/bin/python3.9
python version: 3.9.18

The output of .libPaths() is the same for both radian and R:

[1] "/home/R/x86_64-pc-linux-gnu-library/4.2"  
[2] "/usr/local/R/4.2.2/lib64/R/library"

The output of Sys.getenv("PATH") is also the same for both radian and base R.

Manually specifying --r-binary and setting R_HOME did not change anything.

It seems to be related to issue #243, but I was unable fix that problem...

Thank you very much in advance for any help!

nickhir commented 5 months ago

UPDATE: I created a new micromamba env with (micromamba create -n radian_env radian) and then ran radian from this env and now everything works as intended!