search

ranking-agent / strider

A TRAPI-compliant component of ARAGORN that queries distributed KPs and assembles answers to user questions.
MIT License
3 stars 0 forks source link

Unexpected results returned for pinned -> pinned node #297

Closed maximusunc closed 2 years ago

maximusunc commented 2 years ago

UI: https://qgraph.org/answer/aX2MWJgm

{
  "message": {
    "query_graph": {
      "nodes": {
        "n0": {
          "ids": [
            "MONDO:0005737"
          ],
          "categories": [
            "biolink:Disease",
            "biolink:DiseaseOrPhenotypicFeature",
            "biolink:BiologicalEntity",
            "biolink:NamedThing",
            "biolink:Entity",
            "biolink:ThingWithTaxon"
          ],
          "is_set": false,
          "constraints": [],
          "name": "Ebola hemorrhagic fever"
        },
        "n1": {
          "ids": [
            "NCBIGene:4864"
          ],
          "categories": [
            "biolink:Gene",
            "biolink:BiologicalEntity",
            "biolink:NamedThing",
            "biolink:Entity",
            "biolink:GeneOrGeneProduct",
            "biolink:MacromolecularMachineMixin",
            "biolink:GenomicEntity",
            "biolink:ThingWithTaxon",
            "biolink:ChemicalEntityOrGeneOrGeneProduct",
            "biolink:PhysicalEssence",
            "biolink:PhysicalEssenceOrOccurrent",
            "biolink:OntologyClass",
            "biolink:Protein",
            "biolink:Polypeptide",
            "biolink:GeneProductMixin",
            "biolink:ChemicalEntityOrProteinOrPolypeptide"
          ],
          "is_set": false,
          "constraints": [],
          "name": "NPC1"
        }
      },
      "edges": {
        "e0": {
          "subject": "n0",
          "object": "n1",
          "predicates": [
            "biolink:related_to"
          ],
          "constraints": []
        }
      }
    },
    "knowledge_graph": {
      "nodes": {
        "MONDO:0005737": {
          "categories": [
            "biolink:ThingWithTaxon",
            "biolink:Disease",
            "biolink:DiseaseOrPhenotypicFeature",
            "biolink:BiologicalEntity",
            "biolink:NamedThing",
            "biolink:Entity"
          ],
          "name": "Ebola hemorrhagic fever",
          "attributes": [
            {
              "attribute_type_id": "biolink:same_as",
              "value": [
                "MONDO:0005737",
                "DOID:4325",
                "ORPHANET:319218",
                "EFO:0007243",
                "UMLS:C0282687",
                "MESH:D019142",
                "MEDDRA:10014071",
                "MEDDRA:10014072",
                "MEDDRA:10014074",
                "MEDDRA:10055245",
                "NCIT:C36171",
                "SNOMEDCT:123323003",
                "SNOMEDCT:37109004",
                "ICD10:A98.4"
              ],
              "value_type_id": "metatype:uriorcurie",
              "original_attribute_name": "equivalent_identifiers",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:automat-covidkop",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": "biolink:aggregator_knowledge_source",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            }
          ]
        },
        "NCBIGene:4864": {
          "categories": [
            "biolink:Gene"
          ],
          "name": "NPC1",
          "attributes": null
        },
        "MONDO:0009757": {
          "categories": [
            "biolink:Disease"
          ],
          "name": "Niemann-Pick disease, type C1",
          "attributes": null
        },
        "MONDO:0001134": {
          "categories": [
            "biolink:Disease"
          ],
          "name": "essential hypertension",
          "attributes": null
        },
        "MONDO:0002525": {
          "categories": [
            "biolink:Disease"
          ],
          "name": "Dyslipidemia",
          "attributes": null
        },
        "MONDO:0005044": {
          "categories": [
            "biolink:Disease"
          ],
          "name": "Hypertension",
          "attributes": null
        },
        "MONDO:0005178": {
          "categories": [
            "biolink:Disease"
          ],
          "name": "Any osteoarthritis",
          "attributes": null
        },
        "MONDO:0005252": {
          "categories": [
            "biolink:Disease"
          ],
          "name": "Heart failure",
          "attributes": null
        },
        "MONDO:0005148": {
          "categories": [
            "biolink:Disease"
          ],
          "name": "Type 2 diabetes",
          "attributes": null
        },
        "MONDO:0005010": {
          "categories": [
            "biolink:Disease"
          ],
          "name": "Coronary artery disease",
          "attributes": null
        },
        "MONDO:0100096": {
          "categories": [
            "biolink:Disease"
          ],
          "name": "Predicted COVID-19 vs predicted COVID-19 negative",
          "attributes": null
        },
        "MONDO:0005098": {
          "categories": [
            "biolink:Disease"
          ],
          "name": "Any stroke",
          "attributes": null
        },
        "MONDO:0011923": {
          "categories": [
            "biolink:Disease"
          ],
          "name": "Knee and-or hip osteoarthritis",
          "attributes": null
        }
      },
      "edges": {
        "19936881": {
          "subject": "NCBIGene:4864",
          "object": "MONDO:0005737",
          "predicate": "biolink:affects",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:rtx-kg2",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": null,
              "attribute_source": "infores:rtx-kg2",
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "knowledge_source",
              "value": "infores:semmeddb",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": null,
              "attribute_source": "infores:rtx-kg2",
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "38987966": {
          "subject": "NCBIGene:4864",
          "object": "MONDO:0005737",
          "predicate": "biolink:gene_associated_with_condition",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:rtx-kg2",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": null,
              "attribute_source": "infores:rtx-kg2",
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "knowledge_source",
              "value": "infores:diseases",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": null,
              "attribute_source": "infores:rtx-kg2",
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "536bc14fdb3c2beaf4006a82fa42b712": {
          "subject": "MONDO:0005737",
          "object": "NCBIGene:4864",
          "predicate": "biolink:related_to",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": [
                "infores:translator-biothings-explorer"
              ],
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:primary_knowledge_source",
              "value": [
                "infores:disgenet"
              ],
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": [
                "infores:mydisease-info"
              ],
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "publications",
              "value": [],
              "value_type_id": null,
              "original_attribute_name": null,
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "89eeb6c573e88b9ae24621811260fc7a": {
          "subject": "MONDO:0005737",
          "object": "NCBIGene:4864",
          "predicate": "biolink:treated_by",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": [
                "infores:translator-biothings-explorer"
              ],
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:primary_knowledge_source",
              "value": [
                "infores:semmeddb"
              ],
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": [
                "infores:biothings-semmeddb-gene"
              ],
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "publications",
              "value": [
                "PMID:26698106"
              ],
              "value_type_id": null,
              "original_attribute_name": null,
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "cc94edc6bbca648846231ab143b16e37": {
          "subject": "NCBIGene:4864",
          "object": "MONDO:0005737",
          "predicate": "biolink:correlated_with",
          "attributes": [
            {
              "attribute_type_id": "biolink:Attribute",
              "value": 2.0333733165867888e-153,
              "value_type_id": "EDAM:data_0006",
              "original_attribute_name": "enrichment_p",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:Attribute",
              "value": -0.9525455810575914,
              "value_type_id": "EDAM:data_0006",
              "original_attribute_name": "num_publications",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:original_knowledge_source",
              "value": "infores:cord19-scibite",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": "biolink:original_knowledge_source",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:relation",
              "value": "biolink:correlated_with",
              "value_type_id": "EDAM:data_0006",
              "original_attribute_name": "relation",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:automat-covidkop",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": "biolink:aggregator_knowledge_source",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "gencc_di_ge_GENCC_000108-HGNC_7897-MONDO_0009757-HP_0000007-GENCC_100001MONDO:0009757NCBIGene:4864": {
          "subject": "MONDO:0009757",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:gencc",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://thegencc.org/",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The GenCC DB provides information pertaining to the validity of gene-disease relationships, with a current focus on Mendelian diseases",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.99,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "gencc_di_ge_GENCC_000112-HGNC_7897-OMIM_257220-HP_0000007-GENCC_100001MONDO:0009757NCBIGene:4864": {
          "subject": "MONDO:0009757",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:gencc",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://thegencc.org/",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The GenCC DB provides information pertaining to the validity of gene-disease relationships, with a current focus on Mendelian diseases",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.99,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:has_supporting_publications",
              "value": [
                "PMID:12554680",
                "PMID:9211849",
                "PMID:11349231",
                "PMID:10480349",
                "PMID:9245994",
                "PMID:10521297",
                "PMID:11333381",
                "PMID:11479732"
              ],
              "value_type_id": "biolink:Publication",
              "original_attribute_name": "publication",
              "value_url": null,
              "attribute_source": "infores:gencc",
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "gencc_di_ge_GENCC_000104-HGNC_7897-OMIM_257220-HP_0000007-GENCC_100002MONDO:0009757NCBIGene:4864": {
          "subject": "MONDO:0009757",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:gencc",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://thegencc.org/",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The GenCC DB provides information pertaining to the validity of gene-disease relationships, with a current focus on Mendelian diseases",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.8,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "genebass_2447986MONDO:0001134NCBIGene:4864": {
          "subject": "MONDO:0001134",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genebass",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://genebass.org/",
              "attribute_source": "infores:genetics-data-provider",
              "description": "Genebass is a resource of exome-based association statistics, made available to the public. The dataset encompasses 3,817 phenotypes with gene-based and single-variant testing across 281,852 individuals with exome sequence data from the UK Biobank.",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.3104975224741375,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "magma_gene_20210805MONDO:0002525NCBIGene:4864": {
          "subject": "MONDO:0002525",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.15,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:p_value",
              "value": 4.8879e-8,
              "value_type_id": null,
              "original_attribute_name": "pValue",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "magma_gene_20210805MONDO:0005044NCBIGene:4864": {
          "subject": "MONDO:0005044",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.15,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:p_value",
              "value": 1.1027e-7,
              "value_type_id": null,
              "original_attribute_name": "pValue",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "magma_gene_20210805MONDO:0005178NCBIGene:4864": {
          "subject": "MONDO:0005178",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.15,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:p_value",
              "value": 1.9473e-7,
              "value_type_id": null,
              "original_attribute_name": "pValue",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "magma_gene_20210805MONDO:0005252NCBIGene:4864": {
          "subject": "MONDO:0005252",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.15,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:p_value",
              "value": 4.7844e-7,
              "value_type_id": null,
              "original_attribute_name": "pValue",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "magma_gene_20210805MONDO:0005148NCBIGene:4864": {
          "subject": "MONDO:0005148",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.05,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:p_value",
              "value": 0.000012436,
              "value_type_id": null,
              "original_attribute_name": "pValue",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "magma_gene_20210805MONDO:0005010NCBIGene:4864": {
          "subject": "MONDO:0005010",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.05,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:p_value",
              "value": 0.000091888,
              "value_type_id": null,
              "original_attribute_name": "pValue",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "magma_gene_20210805MONDO:0100096NCBIGene:4864": {
          "subject": "MONDO:0100096",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.05,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:p_value",
              "value": 0.00021454,
              "value_type_id": null,
              "original_attribute_name": "pValue",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "magma_gene_20210805MONDO:0005098NCBIGene:4864": {
          "subject": "MONDO:0005098",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.05,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:p_value",
              "value": 0.00096428,
              "value_type_id": null,
              "original_attribute_name": "pValue",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        },
        "magma_gene_20210805MONDO:0011923NCBIGene:4864": {
          "subject": "MONDO:0011923",
          "object": "NCBIGene:4864",
          "predicate": "biolink:condition_associated_with_gene",
          "attributes": [
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:genetics-data-provider",
              "value_type_id": "biolink:InformationResource",
              "original_attribute_name": null,
              "value_url": "https://translator.broadinstitute.org/genetics_provider/trapi/v1.1",
              "attribute_source": "infores:genetics-data-provider",
              "description": "The Genetics Data Provider KP from NCATS Translator",
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:probability",
              "value": 0.05,
              "value_type_id": null,
              "original_attribute_name": "probability",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:p_value",
              "value": 0.0021273,
              "value_type_id": null,
              "original_attribute_name": "pValue",
              "value_url": null,
              "attribute_source": null,
              "description": null,
              "attributes": null
            },
            {
              "attribute_type_id": "biolink:aggregator_knowledge_source",
              "value": "infores:aragorn"
            }
          ]
        }
      }
    },
    "results": [
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0009757"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "gencc_di_ge_GENCC_000108-HGNC_7897-MONDO_0009757-HP_0000007-GENCC_100001MONDO:0009757NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0009757"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "gencc_di_ge_GENCC_000112-HGNC_7897-OMIM_257220-HP_0000007-GENCC_100001MONDO:0009757NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0009757"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "gencc_di_ge_GENCC_000104-HGNC_7897-OMIM_257220-HP_0000007-GENCC_100002MONDO:0009757NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0001134"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "genebass_2447986MONDO:0001134NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0002525"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "magma_gene_20210805MONDO:0002525NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0005044"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "magma_gene_20210805MONDO:0005044NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0005178"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "magma_gene_20210805MONDO:0005178NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0005252"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "magma_gene_20210805MONDO:0005252NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0005148"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "magma_gene_20210805MONDO:0005148NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0005010"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "magma_gene_20210805MONDO:0005010NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0100096"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "magma_gene_20210805MONDO:0100096NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0005098"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "magma_gene_20210805MONDO:0005098NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0011923"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "magma_gene_20210805MONDO:0011923NCBIGene:4864",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0005737",
              "qnode_id": "MONDO:0005737"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864",
              "qnode_id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "cc94edc6bbca648846231ab143b16e37",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0005737"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "19936881",
              "attributes": null
            },
            {
              "id": "38987966",
              "attributes": null
            }
          ]
        }
      },
      {
        "node_bindings": {
          "n0": [
            {
              "id": "MONDO:0005737"
            }
          ],
          "n1": [
            {
              "id": "NCBIGene:4864"
            }
          ]
        },
        "edge_bindings": {
          "e0": [
            {
              "id": "536bc14fdb3c2beaf4006a82fa42b712",
              "attributes": null
            },
            {
              "id": "89eeb6c573e88b9ae24621811260fc7a",
              "attributes": null
            }
          ]
        }
      }
    ]
  }
}
patrickkwang commented 2 years ago

Seems like the genetics provider was giving bad results. I just re-ran on master and everything looks good - no results from the genetics provider.