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ransona / dreamserver

support for issues with dreamserver
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add function to run suite2p via queue/pipeline but in other users conda envs #5

Open ransona opened 12 months ago

ransona commented 12 months ago

add function to run suite2p via queue/pipeline but in other users conda envs the main aim is for users to be able to have their own versions of suite2p installed.

dendritic commented 12 months ago

I have implemented the first step for this: allowing processes running under adamranson to run commands as other lab users i.e. if the queue listener is running under adamranson, it will be able to run commands (like python) as a different user. to do this, you should use the sudo command, e.g. sudo -u pmateosaparicio python script.py @ransona as a first step, can you test this from a terminal, then we can go from there?

dendritic commented 4 months ago

@ransona I've reimplemented this on the new server. Details: I've created a group called labrunner that you and I are members of. A labrunner can run commands as anyone who is a member of the ransonlab group, as in: sudo -u pmateosaparicio python script.py