AttributeError: 'STARCH' object has no attribute 'means'

[hzongyao]

I use this code python run_STARCH.py -i ./DATA --output DMG -t 10 -m hgTables_hg19.txt -c 3 The 10X directory containing barcodes.tsv, features.tsv, matrix.mtx, and tissue_positions_list.csv The outcome is as follow:

Traceback (most recent call last): File "run_STARCH.py", line 34, in operator = STARCH(i,n_clusters=n_clusters,num_states=3,normal_spots=normal_spots,beta_spots = beta_spot,nthreads=nthreads,gene_mapping_file_name=gene_m_mapping_file_name) File "/mnt/raid/tmp/workflow/STARCH/STARCH.py", line 141, in init logger.info('starting means: '+str(self.means)) AttributeError: 'STARCH' object has no attribute 'means'

[WandeRum]

I have the same issue.

[lucaskerr]

I also have the same issue; image attached. I tried some simple tweaks to both the run_Starch.py and Starch.py scripts but no luck on my end. Any advice?

[braphael8]

Can you tell us the machine type and Python version that you are using? We have seen this issue sporadically on some installations but not on others.

[lucaskerr]

Thanks for your reply! I'm on a 2019 Macbook Pro, Big Sur Version 11.6. Python version 3.8.8. Considering your comment, I just tried running the Starch scripts again on a 2018 PC running Windows 10, Python version 3.7, but I ran into the same error: 'STARCH' object has no attribute 'means'.

[huoyuying]

I have the same issue.

Can you solve this problem now? I have the same issue !

[whitneyt1]

has anyone been able to solve this? When running this on 36 reactions with n_clusters= 1, 2, 3 it successfully runs on all reactions except one reaction repeatedly receives this error when n_clusters=1

thank you!