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raphael-group / THetA

Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. This repository includes the updated algorithm, called THetA2.
http://compbio.cs.brown.edu/projects/theta/
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LICENSE has unicode character #13

Closed drmjc closed 7 years ago

drmjc commented 7 years ago

Hi, The new license in the header of the python files has a '\xe2' character, which is preventing me from running the code: /opt/THetA/bin/RunTHetA

Traceback (most recent call last): File "/opt/THetA/bin/../python/RunTHetA.py", line 38, in from SelectIntervals import * File "/opt/THetA/python/SelectIntervals.py", line 23 SyntaxError: Non-ASCII character '\xe2' in file /opt/THetA/python/SelectIntervals.py on line 23, but no encoding declared; see http://www.python.org/peps/pep-0263.html for details

This solution seems to work: add this to the first 2 lines of each file:

#!/usr/bin/env python
# -*- coding: utf-8 -*-

cheers, Mark

gsatas commented 7 years ago

Hi Mark,

Thanks for bringing this to our attention. I've updated the license in the python files to not contain unicode characters.

Gryte