Can't run with multiple processes on OSX

raphael-group / THetA

Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. This repository includes the updated algorithm, called THetA2.

http://compbio.cs.brown.edu/projects/theta/

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Can't run with multiple processes on OSX #2

Closed jsilter closed 9 years ago

jsilter commented 9 years ago

THetA can't run on OSX with multiple processes due to this issue: http://stackoverflow.com/questions/5900985/multiprocessing-queue-maxsize-limit-is-32767

This could be solved by either setting MAX_QUEUE_SIZE = 2**15-1 (or lower), or to -1 (effectively infinite)

gsatas commented 9 years ago

Thank you for bringing this to our attention. This has been updated as of the most recent release.