search

raphael-group / chisel

CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links
BSD 3-Clause "New" or "Revised" License
37 stars 11 forks source link

-r option in chisel_cloning isn't recognized #15

Closed marialitovchenko closed 3 years ago

marialitovchenko commented 4 years ago

Dear developers,

I would like to use -r option in chisel_cloning command as described on the help page However, then I run following command:

(chisel) [chisel]$ chisel_cloning -s 5 -f 0.1 --seed 123 -r 1

I get an "unrecognized arguments: -r" error:

[2020-Sep-21 14:54:38]Parsing and checking arguments
usage: chisel_cloning [-h] [-x RUNDIR] [-f MAXDIFF] [-s MINSIZE] [-K UPPERK]
                      [--seed SEED]
                      [INPUT]
chisel_cloning: error: unrecognized arguments: -r

Could you please return the missing argument back?

simozacca commented 4 years ago

This is indeed a bug as the mentioned argument is missing from the chisel_cloning command; we will fix this bug in the upcoming release of CHISEL.

Thank you for reporting this issue!

simozacca commented 3 years ago

This bug has been fixed in release 0.0.5